Update dev
#558
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Update dev
#558
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Big refactoring: extract schemes and get rid of container types
…ead of numbering (#161) * name update instead of numbering * apply formatter * fix bug * change update dispatching * apply formatter * implement suggestions * apply formatter * implement suggestions
Bumps [crate-ci/typos](https://github.com/crate-ci/typos) from 1.14.10 to 1.14.11. - [Release notes](https://github.com/crate-ci/typos/releases) - [Changelog](https://github.com/crate-ci/typos/blob/master/CHANGELOG.md) - [Commits](crate-ci/typos@v1.14.10...v1.14.11) --- updated-dependencies: - dependency-name: crate-ci/typos dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Erik Faulhaber <[email protected]>
* Restrict JuliaFormatter to 1.0.32 in CI * Reformat code
* add test * update * fixes * add correction * simplify * fix * update * change comment * add correction type * udate * fixes * up * working * up * cleanup * format * cleanup * rename * merge * fix * fix * fix * format * cleanup * clean * cleanup * fix typos * fix * fix * format * add test * Update src/sph/corrections.jl Co-authored-by: Erik Faulhaber <[email protected]> * Update .typos.toml Co-authored-by: Erik Faulhaber <[email protected]> * remove NoCorrection type * fix cache creation * comment indent * fix naming * format * merge * manual merging * format * renaming * renaming * remove debug * stupid param order mixup * Merge branch 'main' into kernel_correction_summation_density * fix * fixes * fix * format * fix * use set zero * parameter changes * change name of cache creation function * remove abstract type * format * corrections from review * revert particle_density changes * review comments * review corrections * review comment * review comment * format again * format * return boundary_model --------- Co-authored-by: Erik Faulhaber <[email protected]>
* add viscosity field to boundary models * extract viscosity calculation * use viscosity function for `dv_viscosity` * test formatting * formatting * implement suggestions --------- Co-authored-by: Erik Faulhaber <[email protected]>
Co-authored-by: Erik Faulhaber <[email protected]>
Co-authored-by: LasNikas <[email protected]>
* add test * update * fixes * add correction * simplify * fix * update * change comment * add correction type * udate * fixes * up * working * up * cleanup * format * cleanup * rename * merge * fix * fix * fix * format * cleanup * clean * cleanup * fix typos * fix * fix * format * add test * add implementation * fix tests * fix test setup * format * fix tests * format * fix tests * add tests * format * Update src/sph/corrections.jl Co-authored-by: Erik Faulhaber <[email protected]> * Update .typos.toml Co-authored-by: Erik Faulhaber <[email protected]> * remove NoCorrection type * fix cache creation * comment indent * fix naming * format * merge fix & format * merge * manual merging * format * renaming * renaming * remove debug * stupid param order mixup * Merge branch 'main' into kernel_correction_summation_density * fix * fixes * fix * format * fix * use set zero * parameter changes * change name of cache creation function * remove abstract type * format * corrections from review * revert particle_density changes * review comments * review corrections * manual merge * manual merge * fix merge * fix * format * fix test * format * fix merge * fix merge * fix merge * fix review comments * review comments * format * rename * format * review comments * review comment * format * remove function * format * solve review comments * format * review comments * spaces --------- Co-authored-by: Erik Faulhaber <[email protected]>
* Add more detailed interaction timers * Implement suggestions * Fix nbody tests
* add `ViscousInteractionAdami` * add viscosity dependent velocity * add wall velocity * use viscosity function for `dv_viscosity` * add viscosity function * fix sign bug * fix merge conflict * implement suggestions * change viscosity naming * change `create_cache` * add comments * implement suggestion * add tests * fix docs * write `wall_velocity` * apply formatter * add comments in test * modify docs * implement suggestions * typo in docs * insert line for consistency * implement suggestions
* add test * update * fixes * add correction * simplify * fix * update * change comment * add correction type * udate * fixes * up * working * up * cleanup * format * cleanup * rename * merge * fix * fix * fix * format * cleanup * clean * cleanup * fix typos * fix * fix * format * add test * add implementation * fix tests * fix test setup * format * fix tests * format * fix tests * add tests * format * add example * impl * format * rename * fix * fixes * fix * format * broken * working * cleanup * update test * update * format * Update src/sph/corrections.jl Co-authored-by: Erik Faulhaber <[email protected]> * Update .typos.toml Co-authored-by: Erik Faulhaber <[email protected]> * remove NoCorrection type * fix cache creation * comment indent * fix allocations * reducce number of test files * fix naming * format * merge fix & format * merge * manual merging * format * renaming * renaming * remove debug * merge * format * stupid param order mixup * Merge branch 'main' into kernel_correction_summation_density * fix * fixes * fix * format * fix * use set zero * parameter changes * change name of cache creation function * remove abstract type * format * corrections from review * revert particle_density changes * review comments * review corrections * manual merge * manual merge * fix merge * fix * format * fix test * format * fix merge * fix merge * fix merge * fix review comments * review comments * format * rename * format * review comments * review comment * format * remove function * format * solve review comments * format * review comments * spaces * fix merge errors * fix merge error * Merge fix * manual merge * format and fix testcase * rename container to system * format * fix testcase * rename container to system * format * rename container to system * more fixes * format * use set_zero * fix tests * fix * fix test * add doc * rename * correct comment * rename container to system * reverse merge * change smoothing kernel calls * remove additional dw_gamma dispatches * remove additional kernel_correction_coefficient dispatches * comments and fix * format * review * Update src/general/corrections.jl Co-authored-by: Erik Faulhaber <[email protected]> * Update src/general/general.jl Co-authored-by: Erik Faulhaber <[email protected]> * Update src/general/corrections.jl Co-authored-by: Erik Faulhaber <[email protected]> * Update src/general/corrections.jl Co-authored-by: Erik Faulhaber <[email protected]> * Update src/general/corrections.jl Co-authored-by: Erik Faulhaber <[email protected]> * Update src/general/corrections.jl Co-authored-by: Erik Faulhaber <[email protected]> * Update src/general/corrections.jl Co-authored-by: Erik Faulhaber <[email protected]> * Update src/general/corrections.jl Co-authored-by: Erik Faulhaber <[email protected]> * format --------- Co-authored-by: Erik Faulhaber <[email protected]>
Bumps [crate-ci/typos](https://github.com/crate-ci/typos) from 1.14.11 to 1.15.9. - [Release notes](https://github.com/crate-ci/typos/releases) - [Changelog](https://github.com/crate-ci/typos/blob/master/CHANGELOG.md) - [Commits](crate-ci/typos@v1.14.11...v1.15.9) --- updated-dependencies: - dependency-name: crate-ci/typos dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Erik Faulhaber <[email protected]>
#101) * add ForwardDiff * add movement function * add Examples * adapt example file * fix typo * add example description * rename example file * rename suggestion * pass `initial_condition` to `BoundarySPHSystem` * add comment * implement suggestions * fix tests * move `current_acceleration` to `general/system.jl`
* Fix file overwriting issue with saving callback * Fix saving callback again * Undo previous "fix" * Store iter instead of name
…keep existing compat) (#196) Co-authored-by: CompatHelper Julia <[email protected]>
* Fix shape sizes * Fix examples * Revise constructor * Fix tests * Fix tests * Fix examples * Fix tests * Update info messages * Add `tlsph` kwarg to `RectangularTank` * Fix tests * Reformat code * Revise rectangular tank setup * Revise `RectangularShape` docs * Implement suggestion * Fix tests * Fix tests * Fix typos
* fix wall velocity * adapt tests * fix tests * implement suggestions
* First implementation of periodic NHS in 2D * Add experimental code * Add example files * Fix typo * Make periodicity configurable * Delete vortex street example (for now) * Update periodic channel example * Update boundary model in periodic channel * Add periodic channel to tests * Undo `foreach_particle_neighbor` changes * Reformat code * Update comments * Fix `TrivialNeighborhoodSearch` and tests * Reformat code * Fix coverage * Remove debug code * Implement suggestions * Remove `current_coordinates` and work with `PeriodicBox` * Remove periodic box from semi * Fix semi * Fix tests * Fix `TrivialNeighborhoodSearch` --------- Co-authored-by: LasNikas <[email protected]>
* Implement 3D sphere setup * Revise `SphereShape` interface * Fix tests and examples * Fix asymmetric non-deterministic spheres * Fix tests * Add tests for 3D `SphereShape` * Rename `shape_type` to `sphere_type` * Rename `layer_inwards` to `layer_outwards` * Rename `hollow_sphere` to `round_sphere` * Fix tests * Add Fibonacci Sphere implementation * Remove equal area zones implementation This implementation still had large density singularities at the poles. * Fix docs * Implement pole-optimized zonal equal area distribution * Remove old implementations * Implement proper sphere sizes * Remove layer rotation * Add comments * Fix tests * Add `tlsph` option * Fix examples * Improve docs
* Use variable dict indent in JulaFormatter * Reformat code
Co-authored-by: CompatHelper Julia <[email protected]>
* Move neighborhood search to a new standalone package * Remove Morton.jl dependency * Remove tests for neighborhood search * Remove ThreadingUtilities.jl dependency * Fix interpolation * Add docs for neighborhood search * Dispatch `update_nhs!` instead of `nhs_coords` * Reformat code * Update NHS with coordinates of both systems * Initialize NHS with coordinates of both systems * Fix broken functions * Rename package to PointNeighbors.jl * Reformat code * Resort Project.toml * Change PointNeighbors compat to 0.2 * Fix `InitialCondition` set operations * Fix interpolation and tests * Fix docs * Fix example tests * Fix doctests * Fix n-body * Add more comments
* Remove `pinv` in correction matrix inversion step * Improve comment * Update validation files for dam break * Revert "Update validation files for dam break" This reverts commit d08c06d. * Update WCSPH validation files * Update WCSPH validation files * Add single-threaded validation files (see #481)
* Statically return zero verlocity and acceleration without `movement` * Make `write_v0!` and `write_u0!` GPU-compatible * Remove hardcoded float type in rectangular tank setup * Replace more hardcoded `Float64` types * Simplify zero SVector even more
* change message * fix tests --------- Co-authored-by: Erik Faulhaber <[email protected]>
…rce Surface Tension model (#434) * merge by hand * fix merge problems * fix merge * fix merge * fix merge * fix merge * fix merge * more merge fixes * format * fix * fix * fix * fix * fix * more fixes * fix * fix * fix * more fixes * fix * fix * format * running * update * update * optimization * update * update * update * update * format * up * update * remove unused code * switch to support radius * update * fix doc * add adhesion coefficient * update_broken * update * format * add to examples * fix tests * fix merge * fix typos * add basic test * format * rename * format * rename container system * reduce example run time * update news and readme * format * fix test * reduce run time * format * fix * correct merge * update doc test * revert * fix tests * fix * fix * review comments * fix * fix * correct some stuff * init with empty initial condition * review update * rename function * remove unnecessary if * docs * fix doc * revert one change * fix typo * update * try to avoid allocs * fix mem allocs * review update * update docs * update * review * fix * format * make examples smaller * reduce resolution * review * rename * use trixi_include * format * use trixi_include * update * update * review update * format * fix test errors * update * fix surface normal calculation * adjust testcases and review comments * update examples * remove saving interval * fix comment * remove dt
* Fix n-body benchmark * suppress warning * fix formatting * for real --------- Co-authored-by: Sven Berger <[email protected]>
Co-authored-by: Erik Faulhaber <[email protected]>
Co-authored-by: Erik Faulhaber <[email protected]>
… GPU (#532) * Add type `GPUSystem` to determine if a system is stored on the CPU or GPU * Fix systems and tests * Reformat * Fix tests * Fix n-body system * Reformat
Bumps [julia-actions/cache](https://github.com/julia-actions/cache) from 1 to 2. - [Release notes](https://github.com/julia-actions/cache/releases) - [Changelog](https://github.com/julia-actions/cache/blob/main/devdocs/making_a_new_release.md) - [Commits](julia-actions/cache@v1...v2) --- updated-dependencies: - dependency-name: julia-actions/cache dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Precompute git hash * Store git hash in callbacks * Fix --------- Co-authored-by: Niklas Neher <[email protected]>
* Move timers and `@trixi_timeit` to TrixiBase.jl * Require latest version of TrixiBase.jl * Fix tests --------- Co-authored-by: Niklas Neher <[email protected]>
* add wrapper * modify kwarg * implement suggestions
…ack (#462) * add example * replace MSE with MRE * Revert "replace MSE with MRE" This reverts commit 1e00907. * revert * update * format * fix and reduce runtime * Fix comment * implement suggestions * format --------- Co-authored-by: Erik Faulhaber <[email protected]>
* implement `ExtrudeFace` * use `sample_face` in `interpolate_plane_3d` * add docs * add tests * fix bug * create `OpenBoundarySPHSystem` * export OpenBoundarySPHSystem * fix bug * add `tlsph=true` * fix tuple bug * fix typo * fix again * fix for tests * fix layers * calculate particle spacing differently * add show-tests * add `within_boundary_zone` * change `floor` to `ceil` * boundary zone tests * add `evaluate_characteristics` * add tests * add reference functions * add `update_quantities!` * add buffer * add `SystemBuffer` tests * cosmetic change in tests * change `round` to `isapprox` * add update callback * add `UpdateCallback` * add `update_open_boundaries` * fix bugs * add timers * write prescribed quantities * improve dispatching * add example `pipe_flow_2d.jl` * add docs `UpdateCallback` * add `UpdateCallback` * fix typo * apply formatter * modify system buffer * add docstring * add docs * fix tests * fix typos * apply formatter * fix tests * add comment * fix tests * remove update bool * adapt docstring * implement suggestions * fix test * add check if callback is used * add comments in example file * generic types * merge main * undo combining compact support with DEM * remove density and pressure setter * implement suggestions * fix tests * Revert "remove density and pressure setter" This reverts commit 0203a3a. * implement suggestions * rework in- and outflow * rename setter functions * rename function * adapt tests * add docs * rename function * apply formatter * fix tests * fix bug in plot recipes * apply formatter * implement suggestions for `boundary_zone.jl` * rename kwarg * implement suggestions * implement suggestions * modify `check_domain!` * add comments and check for fluid system with buffer * modify error message * fix tests * fix `callback_used` * using Measurements * fix tests * sqrt(eps()) * fix tests again * add doc to `boundary.md` * link single fluid system * fix tests * implement suggestions * fix tests * change the order of functions * modify example * fix tests * fix test again * implement doc suggestions * modify dos * fix typos * implement suggestions * implement suggestions * add EDAC to the example * implement suggestions * modify tests * adapt docs * add `initial_callback_flag` * add to `NEWS.md` and `README.md` * implement suggestions * fix typo
Open Boundaries have been added
* Set to development version 0.1.4 * Update Project.toml
* Fix wrapping for GPU arrays * Adapt `@threaded` macro to work with GPUs * Use new `@threaded` macro * Fix NHS to run GPU code with CPU arrays * Import `@index` from KernelAbstractions.jl For some reason it doesn't run on the CPU otherwise. * Add proper docs for `@threaded` * Fix `foreach_neighbor` * Reformat * Add test for GPU code on the CPU * Fix unit tests * Add unit tests for GPU interaction * Also add tests for GPU versions of `wrap_v` and `wrap_u` * Add kwarg `neighborhood_search` to dam break example * Fix tests * Reformat * Add function `wrap_array` * Fix merge * Fix open boundary code * Implement suggestions * Fix syntax error from merge * Fix `wrap_u` and `wrap_v` for GPU array types * Fix constructor of `BoundarySPHSystem`
…0.9, (keep existing compat) (#551) Co-authored-by: CompatHelper Julia <[email protected]>
Co-authored-by: Erik Faulhaber <[email protected]>
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