Revert "Update dev (#558)"

This reverts commit 70567b6.

.JuliaFormatter.toml

@@ -1,14 +1,8 @@
 # Use SciML style: https://github.com/SciML/SciMLStyle
 style = "sciml"
 
-# Python style alignment. See https://github.com/domluna/JuliaFormatter.jl/pull/732.
-yas_style_nesting = true
-
 # Align struct fields for better readability of large struct definitions
 align_struct_field = true
 
 # No whitespaces in kwargs because this is more common in Julia
 whitespace_in_kwargs = false
-
-# Allow Dict definitions to be aligned like arrays. See https://github.com/domluna/JuliaFormatter.jl/pull/676
-variable_call_indent = ["Dict"]

.github/dependabot.yml

@@ -4,4 +4,4 @@ updates:
   - package-ecosystem: "github-actions"
     directory: "/" # Location of package manifests
     schedule:
-      interval: "monthly"
+      interval: "weekly"

.github/workflows/CompatHelper.yml

@@ -13,4 +13,4 @@ jobs:
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}  # optional
-        run: julia -e 'using CompatHelper; CompatHelper.main(; subdirs=["", "test", "docs"])'
+        run: julia -e 'using CompatHelper; CompatHelper.main(; subdirs=["", "test"])'

.github/workflows/SpellCheck.yml

@@ -8,6 +8,6 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout Actions Repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3
       - name: Check spelling
-        uses: crate-ci/typos@v1.21.0
+        uses: crate-ci/typos@v1.14.10

.github/workflows/ci.yml

@@ -4,93 +4,49 @@ on:
   push:
     branches:
       - main
-    paths-ignore:
-      - 'AUTHORS.md'
-      - 'CITATION.bib'
-      - 'CONTRIBUTING.md'
-      - 'LICENSE.md'
-      - 'NEWS.md'
-      - 'README.md'
-      - '.github/workflows/CompatHelper.yml'
-      - '.github/workflows/TagBot.yml'
-      - 'docs/**'
   pull_request:
-    paths-ignore:
-      - 'AUTHORS.md'
-      - 'CITATION.bib'
-      - 'CONTRIBUTING.md'
-      - 'LICENSE.md'
-      - 'NEWS.md'
-      - 'README.md'
-      - '.github/workflows/CompatHelper.yml'
-      - '.github/workflows/TagBot.yml'
-      - 'docs/**'
   workflow_dispatch:
 
-
 # Cancel redundant CI tests automatically
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
 jobs:
   build:
-    name: Run Tests (Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }})
     runs-on: ubuntu-latest
-    strategy:
-      # Don't cancel all running jobs when one job fails
-      fail-fast: false
-      matrix:
-        version:
-          - '1.9'
-          - '1'
-        os:
-          - ubuntu-latest
-        arch:
-          - x64
-        include:
-          # Also run tests on Windows and macOS-ARM, but only with the latest Julia version
-          - version: '1'
-            os: windows-latest
-            arch: x64
-          - version: '1'
-            os: macos-14
-            arch: arm64
 
     steps:
       - name: Check out project
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3
       - name: Set up Julia
-        uses: julia-actions/setup-julia@v2
+        uses: julia-actions/setup-julia@v1
         with:
-          version: ${{ matrix.version }}
-      - uses: julia-actions/cache@v2
+          version: '1'
+      - name: Apply JuliaFormatter and check format
+        run: |
+          julia -e 'using Pkg; Pkg.add("JuliaFormatter")'
+          julia -e 'using JuliaFormatter; !format(".", verbose=true) &&
+            error("Code not properly formatted")'
       - name: Build package
         uses: julia-actions/julia-buildpkg@v1
       - name: Run unit tests
         uses: julia-actions/julia-runtest@v1
         with:
-          annotate: true
-          # Only run coverage in one Job (Ubuntu and latest Julia version)
-          coverage: ${{ matrix.os == 'ubuntu-latest' && matrix.version == '1' }}
+          coverage: true
         env:
           TRIXIPARTICLES_TEST: unit
       - name: Process coverage results
-        # Only run coverage in one Job (Ubuntu and latest Julia version)
-        if: matrix.os == 'ubuntu-latest' && matrix.version == '1'
         uses: julia-actions/julia-processcoverage@v1
         with:
-          directories: src,test
+          directories: src,test,examples
       - name: Upload coverage report to Codecov
-        # Only run coverage in one Job (Ubuntu and latest Julia version)
-        if: matrix.os == 'ubuntu-latest' && matrix.version == '1'
-        uses: codecov/codecov-action@v4
+        uses: codecov/codecov-action@v3
         with:
+          token: ${{ secrets.CODECOV_TOKEN }}
           files: lcov.info
           fail_ci_if_error: true
           flags: unit
-        env:
-          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
       - name: Run example tests
         uses: julia-actions/julia-runtest@v1
         with:

.gitignore

@@ -4,20 +4,4 @@ Manifest.toml
 out
 out_*
 docs/build
-docs/src/authors.md
-docs/src/contributing.md
-docs/src/license.md
-docs/src/code_of_conduct.md
-docs/src/news.md
-*_replaced.md
-run
-*.json
-!.zenodo.json
-*.png
-*.jpg
-*.gif
-*.svg
-*.vtu
-*.pvd
-*.mp4
-*.csv
+env

.typos.toml

@@ -1,6 +1,2 @@
 [default.extend-words]
 ba = "ba"
-Shepard = "Shepard"
-shepard = "shepard"
-Strack = "Strack"
-Lok = "Lok"