update vignettes #114
Annotations
7 errors and 27 warnings
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there is no package called 'xlsx'
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unused arguments (prioritizing_weights = prioritizing_weights, sender_receiver_separate = FALSE)
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conditions written in contrasts should be in the condition-indicating column! This is not the case, which can lead to errors downstream.
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could not find function "get_abundance_expression_info"
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could not find function "get_abundance_expression_info"
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cannot read from connection
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cannot read from connection
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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'::' or ':::' import not declared from: 'scuttle'
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Codoc mismatches from documentation object 'get_frac_exprs_sampleAgnostic':
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Undocumented arguments in documentation object 'process_abundance_expression_info'
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Files in the 'vignettes' directory but no files in 'inst/doc':
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Directory 'inst/doc' does not exist.
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'::' or ':::' import not declared from: 'scuttle'
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Codoc mismatches from documentation object 'get_frac_exprs_sampleAgnostic':
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Undocumented arguments in documentation object 'process_abundance_expression_info'
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Files in the 'vignettes' directory but no files in 'inst/doc':
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Directory 'inst/doc' does not exist.
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Set BiocVersion
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Install dependencies pass 2
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Install dependencies pass 2
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Install dependencies pass 1
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Install dependencies pass 1
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Install dependencies pass 1
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Install dependencies pass 1
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Install dependencies pass 1
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Install dependencies pass 1
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Install dependencies pass 1
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