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@BioPsyk Institute of Biological Psychiatry

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    10 repositories

    • pgscalculator

      Public
      Shell
      •0•0•3•0•Updated Jan 22, 2025Jan 22, 2025

    • cleansumstats

      Public
      Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
      gwaspipelinenextflowdata-cleaning
      Shell
      •2•14•31•0•Updated Dec 16, 2024Dec 16, 2024

    • PAFGRS

      Public
      R
      •1•3•15•0•Updated Apr 19, 2024Apr 19, 2024

    • biopsyk.github.io

      Public
      Public webpage for the BioPsyk organization
      CSS
      •1•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • vcf_reference_build_tools

      Public
      A tool to update or add reference build information such as position, rsid, etc
      Shell
      •0•0•0•0•Updated Jan 24, 2024Jan 24, 2024

    • fastqtl_LMM

      Public
      D
      •0•0•1•0•Updated Dec 5, 2023Dec 5, 2023

    • sumstat-tools

      Public
      Tools for curating and filtering sumstats
      gwas
      Shell
      •0•0•2•0•Updated Jan 13, 2023Jan 13, 2023

    • ibp_pgs_pipelines

      Public
      Pipelines to calculate polygenic scores for data at Institute of Biological Psychiatry
      Nextflow
      •0•0•5•0•Updated Jul 15, 2022Jul 15, 2022

    • mlm_analysis_pipeline

      Public
      IBP analysis pipeline to perform mixed model analysis for genome wide association studies
      Nextflow
      •0•1•4•0•Updated Apr 20, 2022Apr 20, 2022

    • Run_GSEM

      Public
      Code to run Genomic SEM for common factor GWAS
      R
      •0•2•0•0•Updated Feb 14, 2022Feb 14, 2022