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@BioPsyk

Institute of Biological Psychiatry

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  1. cleansumstats cleansumstats Public

    Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.

    Shell 14 2

  2. PAFGRS PAFGRS Public

    R 3 1

  3. Run_GSEM Run_GSEM Public

    Code to run Genomic SEM for common factor GWAS

    R 2

  4. mlm_analysis_pipeline mlm_analysis_pipeline Public

    IBP analysis pipeline to perform mixed model analysis for genome wide association studies

    Nextflow 1

  5. sumstat-tools sumstat-tools Public

    Tools for curating and filtering sumstats

    Shell

  6. biopsyk.github.io biopsyk.github.io Public

    Public webpage for the BioPsyk organization

    CSS 1

Repositories

Showing 10 of 10 repositories
  • pgscalculator Public
    BioPsyk/pgscalculator’s past year of commit activity
    Shell 0 0 3 0 Updated Jan 22, 2025
  • cleansumstats Public

    Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.

    BioPsyk/cleansumstats’s past year of commit activity
    Shell 14 2 31 0 Updated Dec 16, 2024
  • PAFGRS Public
    BioPsyk/PAFGRS’s past year of commit activity
    R 3 1 15 0 Updated Apr 19, 2024
  • biopsyk.github.io Public

    Public webpage for the BioPsyk organization

    BioPsyk/biopsyk.github.io’s past year of commit activity
    CSS 0 1 0 0 Updated Mar 20, 2024
  • vcf_reference_build_tools Public

    A tool to update or add reference build information such as position, rsid, etc

    BioPsyk/vcf_reference_build_tools’s past year of commit activity
    Shell 0 0 0 0 Updated Jan 24, 2024
  • fastqtl_LMM Public
    BioPsyk/fastqtl_LMM’s past year of commit activity
    D 0 0 1 0 Updated Dec 5, 2023
  • sumstat-tools Public

    Tools for curating and filtering sumstats

    BioPsyk/sumstat-tools’s past year of commit activity
    Shell 0 0 2 0 Updated Jan 13, 2023
  • ibp_pgs_pipelines Public

    Pipelines to calculate polygenic scores for data at Institute of Biological Psychiatry

    BioPsyk/ibp_pgs_pipelines’s past year of commit activity
    Nextflow 0 0 5 0 Updated Jul 15, 2022
  • mlm_analysis_pipeline Public

    IBP analysis pipeline to perform mixed model analysis for genome wide association studies

    BioPsyk/mlm_analysis_pipeline’s past year of commit activity
    Nextflow 1 0 4 0 Updated Apr 20, 2022
  • Run_GSEM Public

    Code to run Genomic SEM for common factor GWAS

    BioPsyk/Run_GSEM’s past year of commit activity
    R 2 0 0 0 Updated Feb 14, 2022

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