Code

CWL Model, Encoding & Decoding#421

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HLWeil merged 49 commits intomainnfdi4plants/ARCtrl:mainfrom CWLnfdi4plants/ARCtrl:CWLCopy head branch name to clipboardOct 21, 2024

+2,007-9

Commits

Commits on Oct 21, 2024

• Add cwl model

  

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  081ca04

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• Add cwl decode functions

  

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• Add testing project

  

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  8cfb04c

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• fix references in decode

  

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  63f8cdc

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• fix cwl type naming

  

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  cd3cdee

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• change naming of CWL to CWLProcessingUnits

  

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  3da6974

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• fix test fsproj

  

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• add test strings

  

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• Add cwl test

  

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  6ae8e47

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• fix optional fields

  

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  bbc5a42

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• rewrite tests to be more clear

  

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  a9e64d3

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• reorganize tests

  

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• dix dockerFile requirement

  

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  3c5e2f8

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• fix EnvVarRequirement

  

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• fix SchemaDefRequirement

  

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• fix SoftwareRequirements

  

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• fix workdirReq and resourceReq

  

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  e44e736

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• start separating processunits for better modularity / edge case handling

  

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  3c6c0a3

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• reorder and specify wf specific types

  

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• change in-/outputs to dynamicObj for more flexibility

  

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• add workflow steps

  

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• add workflow description type

  

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• add steps decoding

  

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  ccefbff

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• fix direct map decode

  

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• add WorkflowSteps tests

  

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• support direct type mappings for inputs and outputs

  

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  95dab47

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• remove try with for dirent initial workdir

  

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• add overflow decoder

  

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• add cmd tool metadata and tests

  

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  7007a0b

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• fix for new dynamic obj version

  

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• update fsproj

  

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  3fca0c1

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• Update YAMLicious to version 0.0.2

  

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• rename Type to Type_ for fable

  

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• add failcase to requirements

  

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• add wf requirements to decoder

  

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• add metadata and dynobj testing (fix test runs)

  

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• trim strings for python

  

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• update yamlicious version

  

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• add workflow decoding

  

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• add cwl to all test list

  

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• rename types and tests

  

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• add attachmembers attribute

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• switch to resizearray and add some comments

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• add optional field to inputs

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• separate processing units and remove module

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• change version and class to optional on tool and wf descriptions

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• remove type CLWClass :(

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• reorganize modules

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• remove underlying modules

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