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@nfdi4plants

DataPLANT

Services and infrastructures to support #FAIRData science and good data management practices within the plant basic research community. #NFDI.

Hi there 👋 We are DataPLANT

Our mission: Driving the digital change in plant science

DataPLANT’s mission is to provide a sustainable and well annotated data management platform for plant sciences. DataPLANT will pave the way from classical paper publication to pure data publication including the Annotated Research Context (ARC)

The community

DataPlant is primarily geared towards the needs of fundamental plant research (e.g. those represented by the DFG categories 202-[01 evolution and systematics of plants and animals, 04 plant physiology, 05 plant biochemistry and biophysics, 06 plant cell and developmental biology, 07 plant genetics]. As such DataPlant is especially adapter to large scale data sets be it omics science or imaging and is ready to store petabaytes of annotated data.

The Annotated Research Context (ARC)

DataPlant will allow users to store their data in form of an annotated research context. This includes not only the measurement data, but also (meta)data annotations, tools, and scripts. This will allow reproducibility plus to forward “raw data” and metadata slices to public repositories (e.g. EBI NCBI etc.).

More info at https://www.nfdi4plants.org/

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  1. ARCitect ARCitect Public

    Cross-platform app to create and manage ARCs.

    Vue 9 6

  2. DataHUB DataHUB Public

    This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

    Shell 2 3

  3. ARC-specification ARC-specification Public

    13 13

  4. Swate Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    F# 32 6

  5. ARCtrl ARCtrl Public

    Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    F# 17 8

  6. dataplan dataplan Public

    DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT

    JavaScript 5 10

Repositories

Showing 10 of 84 repositories
  • ARCtrl Public

    Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    nfdi4plants/ARCtrl’s past year of commit activity
    F# 17 MIT 8 42 (1 issue needs help) 4 Updated Jan 22, 2025
  • Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    nfdi4plants/Swate’s past year of commit activity
    F# 32 MIT 6 24 1 Updated Jan 22, 2025
  • Swate-templates Public

    A collection of templates for Swate (https://github.com/nfdi4plants/Swate).

    nfdi4plants/Swate-templates’s past year of commit activity
    F# 4 18 7 1 Updated Jan 22, 2025
  • ena2swate Public

    Generate SWATE template from ENA checklists

    nfdi4plants/ena2swate’s past year of commit activity
    CSS 0 1 0 0 Updated Jan 22, 2025
  • DataHUB Public

    This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

    nfdi4plants/DataHUB’s past year of commit activity
    Shell 2 MIT 3 21 0 Updated Jan 22, 2025
  • nfdi4plants.knowledgebase Public

    This is the source repo for the nfdi4plants knowledge base webpage.

    nfdi4plants/nfdi4plants.knowledgebase’s past year of commit activity
    MDX 3 CC-BY-4.0 32 5 0 Updated Jan 22, 2025
  • nfdi4plants.github.io Public

    DataPLANT static website using Fornax

    nfdi4plants/nfdi4plants.github.io’s past year of commit activity
    Astro 4 MIT 16 2 0 Updated Jan 22, 2025
  • ARCTokenization Public

    Definition of controlled vocabulary tokens and library to tokenize ARC metadata into these tokens

    nfdi4plants/ARCTokenization’s past year of commit activity
    F# 4 MIT 2 12 1 Updated Jan 21, 2025
  • nfdi4plants/arc-cwl-ro-crate-profile’s past year of commit activity
    0 MIT 0 8 1 Updated Jan 21, 2025
  • arc-validate Public

    Home of all the tools and libraries to create and run validation of ARCs

    nfdi4plants/arc-validate’s past year of commit activity
    F# 4 MIT 2 17 2 Updated Jan 15, 2025

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