Repositories list

• ARCtrl

  Public
  Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

  fsharpisaarc+ 3rdmfair-datafable-libraries

  F#

  •

  MIT License

  •8•17•42•4•Updated Jan 22, 2025Jan 22, 2025

• Swate

  Public
  Excel Add-In for annotation of experimental data and computational workflows.

  educationbiologyontology+ 4isaresearch-data-managementrdmminimal-information

  F#

  •

  MIT License

  •6•32•24•1•Updated Jan 22, 2025Jan 22, 2025

• Swate-templates

  Public
  A collection of templates for Swate (https://github.com/nfdi4plants/Swate).

  F#

  •18•4•7•1•Updated Jan 22, 2025Jan 22, 2025

• ena2swate

  Public
  Generate SWATE template from ENA checklists

  CSS

  •1•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• DataHUB

  Public
  This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

  Shell

  •

  MIT License

  •3•2•21•0•Updated Jan 22, 2025Jan 22, 2025

• nfdi4plants.knowledgebase

  Public
  This is the source repo for the nfdi4plants knowledge base webpage.

  slidestutorialsfaq+ 3how-toknowledge-baseguides

  MDX

  •

  Creative Commons Attribution 4.0 International

  •32•3•5•0•Updated Jan 22, 2025Jan 22, 2025

• nfdi4plants.github.io

  Public
  DataPLANT static website using Fornax

  Astro

  •

  MIT License

  •16•4•2•0•Updated Jan 22, 2025Jan 22, 2025

• ARCTokenization

  Public
  Definition of controlled vocabulary tokens and library to tokenize ARC metadata into these tokens

  F#

  •

  MIT License

  •2•4•12•1•Updated Jan 21, 2025Jan 21, 2025

• arc-cwl-ro-crate-profile

  Public
  MIT License

  •0•0•8•1•Updated Jan 21, 2025Jan 21, 2025

• arc-validate

  Public
  Home of all the tools and libraries to create and run validation of ARCs

  dockerunit-testingvalidation+ 7expectofsharpdotnetarcnfdi4plantsdataplantisa-dotnet

  F#

  •

  MIT License

  •2•4•17•2•Updated Jan 15, 2025Jan 15, 2025

• arc-validation-packages

  Public
  ARC validation packages for https://avpr.nfdi4plants.org maintained by DataPLANT

  F#

  •

  MIT License

  •0•1•2•1•Updated Jan 14, 2025Jan 14, 2025

• arcmanager_frontend

  Public
  Web-based application for creating and managing your ARCs directly on the DataHUB.

  Vue

  •

  GNU Affero General Public License v3.0

  •0•0•1•0•Updated Jan 14, 2025Jan 14, 2025

• arcmanager_backend

  Public
  FastAPI backend for the ARCmanager.

  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• elab2arc

  Public
  A prototype to convert eLabFTW experiments to ARC assays

  HTML

  •2•0•6•0•Updated Jan 14, 2025Jan 14, 2025

• dataplan

  Public
  DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT

  documentgeneration

  JavaScript

  •

  GNU General Public License v3.0

  •10•5•19•0•Updated Jan 7, 2025Jan 7, 2025

• arc-rdm.org

  Public
  The official ARC website!

  Astro

  •2•2•3•0•Updated Dec 23, 2024Dec 23, 2024

• ARCtrl.Querymodel

  Public
  This library contains reader functions to interact with the different formats present in an ARC

  F#

  •

  MIT License

  •1•4•3•0•Updated Dec 20, 2024Dec 20, 2024

• ARCitect

  Public
  Cross-platform app to create and manage ARCs.

  Vue

  •6•9•30•1•Updated Dec 20, 2024Dec 20, 2024

• Branding

  Public
  logos, colorschemes, etc. of DataPLANT and associated applications

  SCSS

  •

  MIT License

  •2•4•0•0•Updated Dec 19, 2024Dec 19, 2024

• isa-ro-crate-profile

  Public
  MIT License

  •0•4•6•1•Updated Dec 19, 2024Dec 19, 2024

• arc-validate-package-registry

  Public
  A repository of validation packages for ARCs

  F#

  •

  MIT License

  •4•2•21•0•Updated Dec 12, 2024Dec 12, 2024

• resilientDataHUB

  Public
  Jinja

  •

  GNU Affero General Public License v3.0

  •0•0•0•3•Updated Dec 12, 2024Dec 12, 2024

• BOAT-Builder-for-Ontology-ARC-Tables

  Public
  This tool/website is for a user friendly creating of an ARC template (essay or study) out of your free text protocols with self-annotated ontology labeled terms. These templates can be used in your ARC afterwards.

  F#

  •0•2•7•0•Updated Dec 11, 2024Dec 11, 2024

• training-material

  Public
  Training material of DataPLANT workshops and classes

  HTML

  •

  Creative Commons Attribution 4.0 International

  •2•0•1•1•Updated Dec 10, 2024Dec 10, 2024

• nfdi4plants_ontology

  Public
  An intermediate ontology for plants used by DataPLANT to fill the ontology gap

  ontologybrokernfdi4plants+ 2dataplantdbpo

  F#

  •

  MIT License

  •10•7•3•0•Updated Dec 7, 2024Dec 7, 2024

• dataplant-errorpages

  Public
  HTML

  •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• archigator-backend

  Public
  Archigator, a publicaton tool from Gitlab to Invenio

  Python

  •

  GNU Affero General Public License v3.0

  •0•1•2•0•Updated Dec 3, 2024Dec 3, 2024

• archigator-frontend

  Public
  TypeScript

  •0•1•7•0•Updated Dec 3, 2024Dec 3, 2024

• Swobup

  Public
  Swate DB update tool

  JavaScript

  •

  GNU General Public License v3.0

  •1•5•3•0•Updated Nov 22, 2024Nov 22, 2024

• arc-ro-crate-profile

  Public
  MIT License

  •0•0•5•1•Updated Nov 1, 2024Nov 1, 2024