update packages versions for scheduled build #330
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Merge branch 'main' of https://github.com/insightsengineering/teal.goshawk # Conflicts: # R/tm_g_gh_boxplot.R
Merge branch 'main' of https://github.com/insightsengineering/teal.goshawk # Conflicts: # R/tm_g_gh_boxplot.R
Unit Tests Summary 1 files 1 suites 58s ⏱️ Results for commit 2d67b57. ♻️ This comment has been updated with latest results. |
Unit Test Performance Difference
Results for commit e034671 ♻️ This comment has been updated with latest results. |
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2 dependency tests fixed. Updating testthat to fix the 3rd one https://github.com/insightsengineering/teal.goshawk/actions/runs/12883188382 |
.github/workflows/scheduled.yaml
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| extra-deps: | | ||
| MultiAssayExperiment (>= 1.32.0);SummarizedExperiment (>= 1.36.0);teal.slice (>= 0.5.1.9021) |
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this is interesting as teal.goshawk has nothing to do with MAE and SE packages
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@gogonzo extra-deps is the parameter for packages that have nothing to do with the original package.
extra-deps is for the second or for the third level dependencies
teal.goshawk -> teal -> teal.slice -> MultiAssayExperiment, SummarziedExperiment
If you want to specify min version of a 3rd level dependency and you don't want to put it inside DESCRIPTION file, this is the way to go. We discussed this with @pawelru here insightsengineering/teal#1445 (comment)
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Specified shinytest2 version and rerunning the build https://github.com/insightsengineering/teal.goshawk/actions/runs/12908665973 |
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@llrs-roche would you mind taking a look? I fixed all dependency tests (besides release ofc). |
Co-authored-by: Lluís Revilla <[email protected]>
| @@ -38,6 +38,8 @@ jobs: | |||
| strategy: ${{ matrix.test-strategy }} | |||
| additional-env-vars: | | |||
| PKG_SYSREQS_DRY_RUN=true | |||
| extra-deps: | | |||
| matrixStats (>= 1.5.0);teal.slice (>= 0.5.1.9021) | |||
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we may be able to remove teal.slice from here, once this is merged https://github.com/insightsengineering/teal/pull/1461/files
m7pr
changed the title
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Rerunning after the relaxation of assumptions on bioconductor packages versions https://github.com/insightsengineering/teal.goshawk/actions/runs/12932596927 |
Part of insightsengineering/nestdevs-tasks#98
Build https://github.com/insightsengineering/teal.goshawk/actions/runs/12882792248