Ninth reconciliation PR from production/RRFS.v1 + Add CCPP host variable to track initialization of GFS_phys_time_vary (#2544) + develop of WW3 up to 2024-01-11 to dev/ufs-weather-model #1342 (#2549)

Ninth reconciliation PR from production/RRFS.v1 + Add CCPP host variable to track initialization of GFS_phys_time_vary (#2544) + develop of WW3 up to 2024-01-11 to dev/ufs-weather-model #1342 (#2549) #6909