Skip to content

Commit

Permalink
Merge pull request #41 from tecnomod-um/dev
Browse files Browse the repository at this point in the history 
Dev
  • Loading branch information
@danibanezRepos
danibanezRepos authored Sep 24, 2024
2 parents 429eec3 + 4a9e317 commit 0984702
Show file tree
Hide file tree
Showing 97 changed files with 5,054 additions and 3,285 deletions.
Binary file modified public/useCases/UC1.zip
View file
Binary file not shown.
490 changes: 283 additions & 207 deletions public/useCases/UC1/1.json
View file

Large diffs are not rendered by default.

421 changes: 243 additions & 178 deletions public/useCases/UC1/2.json
View file

Large diffs are not rendered by default.

184 changes: 110 additions & 74 deletions public/useCases/UC1/3.1.json
View file

Large diffs are not rendered by default.

278 changes: 157 additions & 121 deletions public/useCases/UC1/3.2.json
View file

Large diffs are not rendered by default.

271 changes: 143 additions & 128 deletions public/useCases/UC1/3.3.json
View file

Large diffs are not rendered by default.

542 changes: 289 additions & 253 deletions public/useCases/UC1/4.1.json
View file

Large diffs are not rendered by default.

624 changes: 331 additions & 293 deletions public/useCases/UC1/4.2.bp.json
View file

Large diffs are not rendered by default.

544 changes: 290 additions & 254 deletions public/useCases/UC1/4.2.json
View file

Large diffs are not rendered by default.

119 changes: 67 additions & 52 deletions public/useCases/UC1/5.1.json
View file
Original file line number Diff line number Diff line change
Expand Up @@ -92,46 +92,6 @@
}
}
},
{
"id": 7,
"data": "https://www.ncbi.nlm.nih.gov/nuccore/NC_000016.10",
"label": "chr-16",
"color": "#3db1fe",
"type": "chromosome",
"varID": -1,
"graph": "http://rdf.biogateway.eu/graph/gene",
"class": "http://purl.obolibrary.org/obo/SO_0000340",
"shape": "big ellipse",
"font": {
"color": "black"
},
"properties": {
"is instance of": {
"uri": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"operator": "="
},
"has name": {
"uri": "http://www.w3.org/2004/02/skos/core#prefLabel",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"operator": "="
},
"category": {
"uri": "https://w3id.org/biolink/vocab/category",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"operator": "="
}
}
},
{
"id": 13,
"data": "?Gene___0___URI",
Expand Down Expand Up @@ -327,16 +287,62 @@
},
"classTransitive": false,
"classOmmited": false
},
{
"id": 15,
"data": "?Chromosome___0___URI",
"label": "CHROMOSOME",
"color": "#27e5ff",
"type": "chromosome",
"varID": 0,
"graph": "http://rdf.biogateway.eu/graph/tad",
"class": "http://purl.obolibrary.org/obo/SO_0000340",
"shape": "big ellipse",
"font": {
"color": "black"
},
"properties": {
"is instance of": {
"uri": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"as": "",
"operator": "="
},
"has name": {
"uri": "http://www.w3.org/2004/02/skos/core#prefLabel",
"data": "chr-16",
"show": false,
"type": "text",
"transitive": false,
"as": "",
"operator": "="
},
"category": {
"uri": "https://w3id.org/biolink/vocab/category",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"as": "",
"operator": "="
}
},
"classTransitive": false,
"classOmmited": false,
"classOmitted": false
}
],
"edges": [
{
"id": 0,
"id": 1,
"dashes": false,
"from": 1,
"to": 7,
"label": "part of",
"data": "http://purl.obolibrary.org/obo/BFO_0000050",
"to": 13,
"label": "involved in positive regulation of",
"data": "http://purl.obolibrary.org/obo/RO_0002429",
"isOptional": false,
"isTransitive": false,
"isFromInstance": false,
Expand All @@ -363,12 +369,12 @@
}
},
{
"id": 1,
"id": 2,
"dashes": false,
"from": 1,
"to": 13,
"label": "involved in positive regulation of",
"data": "http://purl.obolibrary.org/obo/RO_0002429",
"to": 14,
"label": "molecularly interacts with",
"data": "http://purl.obolibrary.org/obo/RO_0002436",
"isOptional": false,
"isTransitive": false,
"isFromInstance": false,
Expand All @@ -395,12 +401,12 @@
}
},
{
"id": 2,
"id": 3,
"dashes": false,
"from": 1,
"to": 14,
"label": "molecularly interacts with",
"data": "http://purl.obolibrary.org/obo/RO_0002436",
"to": 15,
"label": "part of",
"data": "http://purl.obolibrary.org/obo/BFO_0000050",
"isOptional": false,
"isTransitive": false,
"isFromInstance": false,
Expand Down Expand Up @@ -458,6 +464,15 @@
"uri_graph": "http://rdf.biogateway.eu/graph/prot",
"instance": false,
"class": true
},
"15": {
"isMetric": false,
"varID": 0,
"type": "chromosome",
"label": "CHROMOSOME 0",
"uri_graph": "http://rdf.biogateway.eu/graph/tad",
"instance": false,
"class": true
}
},
"isDistinct": true,
Expand Down
195 changes: 99 additions & 96 deletions public/useCases/UC1/5.2.json
View file
Original file line number Diff line number Diff line change
Expand Up @@ -4,94 +4,6 @@
"id": 0,
"label": "Default",
"nodes": [
{
"id": 0,
"data": "http://rdf.biogateway.eu/gene/9606/TOX3",
"label": "TOX3",
"color": "#fe859a",
"type": "gene",
"varID": -1,
"graph": "http://rdf.biogateway.eu/graph/gene",
"class": "http://semanticscience.org/resource/SIO_010035",
"shape": "big ellipse",
"font": {
"color": "black"
},
"properties": {
"is instance of": {
"uri": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"as": "",
"operator": "="
},
"part of": {
"uri": "http://purl.obolibrary.org/obo/BFO_0000050",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"as": "",
"operator": "="
},
"in taxon": {
"uri": "http://purl.obolibrary.org/obo/RO_0002162",
"data": "",
"show": false,
"type": "link",
"transitive": false,
"as": "",
"operator": "="
},
"start position": {
"uri": "http://purl.obolibrary.org/obo/GENO_0000894",
"data": "",
"show": false,
"type": "number",
"transitive": false,
"as": "",
"operator": "="
},
"end position": {
"uri": "http://purl.obolibrary.org/obo/GENO_0000895",
"data": "",
"show": true,
"type": "number",
"transitive": false,
"as": "",
"operator": "="
},
"has synonym": {
"uri": "http://www.w3.org/2004/02/skos/core#altLabel",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"as": "",
"operator": "="
},
"has name": {
"uri": "http://www.w3.org/2004/02/skos/core#prefLabel",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"as": "",
"operator": "="
},
"has definition": {
"uri": "http://www.w3.org/2004/02/skos/core#definition",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"as": "",
"operator": "="
}
}
},
{
"id": 20,
"data": "?Tfac2gene___0___URI",
Expand Down Expand Up @@ -348,16 +260,107 @@
"operator": "="
}
}
},
{
"id": 23,
"data": "?Gene___0___URI",
"label": "GENE",
"color": "#1ec9ce",
"type": "gene",
"varID": 0,
"graph": "http://rdf.biogateway.eu/graph/gene",
"class": "http://semanticscience.org/resource/SIO_010035",
"shape": "big ellipse",
"font": {
"color": "black"
},
"properties": {
"is instance of": {
"uri": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"as": "",
"operator": "="
},
"part of": {
"uri": "http://purl.obolibrary.org/obo/BFO_0000050",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"as": "",
"operator": "="
},
"in taxon": {
"uri": "http://purl.obolibrary.org/obo/RO_0002162",
"data": "9606",
"show": false,
"type": "link",
"transitive": false,
"as": "",
"operator": "⊆"
},
"end position": {
"uri": "http://purl.obolibrary.org/obo/GENO_0000895",
"data": "",
"show": false,
"type": "number",
"transitive": false,
"as": "",
"operator": "="
},
"start position": {
"uri": "http://purl.obolibrary.org/obo/GENO_0000894",
"data": "",
"show": false,
"type": "number",
"transitive": false,
"as": "",
"operator": "="
},
"has definition": {
"uri": "http://www.w3.org/2004/02/skos/core#definition",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"as": "",
"operator": "="
},
"has synonym": {
"uri": "http://www.w3.org/2004/02/skos/core#altLabel",
"data": "",
"show": false,
"type": "text",
"transitive": false,
"as": "",
"operator": "="
},
"has name": {
"uri": "http://www.w3.org/2004/02/skos/core#prefLabel",
"data": "TOX3",
"show": false,
"type": "text",
"transitive": false,
"as": "",
"operator": "="
}
},
"classTransitive": false,
"classOmmited": false,
"classOmitted": false
}
],
"edges": [
{
"id": 8,
"id": 9,
"dashes": false,
"from": 20,
"to": 0,
"label": "object",
"data": "http://www.w3.org/1999/02/22-rdf-syntax-ns#object",
"to": 22,
"label": "subject",
"data": "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject",
"isOptional": false,
"isTransitive": false,
"isFromInstance": false,
Expand All @@ -384,12 +387,12 @@
}
},
{
"id": 9,
"id": 10,
"dashes": false,
"from": 20,
"to": 22,
"label": "subject",
"data": "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject",
"to": 23,
"label": "object",
"data": "http://www.w3.org/1999/02/22-rdf-syntax-ns#object",
"isOptional": false,
"isTransitive": false,
"isFromInstance": false,
Expand Down
Loading

0 comments on commit 0984702

Please sign in to comment.