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Summary on Supporting PyTorch
elasticdl train --image_name=elasticdl:mnist: tutorials/elasticdl_local.md
setup entry: elasticdl=elasticdl_client.main:main
run task (training/evaluation/prediction).Only calculate the gradient and report gradient to ps.
elastic/python/worker/worker.py
Push parameters to PS:elastic/python/worker/ps_client.py
Usually, we train in PyTorch with an optimizer.
# training and testing
for epoch in range(EPOCH):
for step, (b_x, b_y) in enumerate(train_loader): # gives batch data, normalize x when iterate train_loader
output = cnn(b_x)[0] # cnn output
loss = loss_func(output, b_y) # cross entropy loss
optimizer.zero_grad() # clear gradients for this training step
loss.backward() # backpropagation, compute gradients
optimizer.step() # apply gradientsIn elacticdl framework, worker nodes pull datasets from master and compute gradients without apply gradients. At the same time, the parameter servers provide parameters to the worker. Worker nodes need to send gradients information back to the ps rather than process it themselves. So the gradients information needs to be displayed.
a→b→c→d
↓
e
Generally, only the gradient of leaf nodes is calculated, and for the leaf nodes c and node b would not have explicitly to keep with the gradient in the process of calculation (because in general only need to update the leaf nodes), can save a large part of the memory, but in the process of debugging, sometimes we need to monitor the intermediate variable gradient, in order to ensure the effectiveness of the network.
Two methods to print out the gradient of the leaf node: Tensor.retain_grad() and hook.
Tensor.retain_grad() saves the gradient of non-leaf nodes, the cost is to increase the consumption of video memory, while the hook function method is to print directly during the reverse calculation, so it will not increase the consumption of video memory, the usage of retain_grad() is more convenient than the hook function.
# Tensor.retain_grad
x = Variable(torch.ones(2, 2), requires_grad=True)
y = x + 2
y.retain_grad()
z = y * y * 3
out = z.mean()
out.backward()
print(y.grad)
> tensor([[4.5000, 4.5000],
[4.5000, 4.5000]])# hook
grads = {}
def save_grad(name):
def hook(grad):
grads[name] = grad
return hook
x = Variable(torch.randn(1,1), requires_grad=True)
y = 3*x
z = y**2
# In here, save_grad('y') returns a hook (a function) that keeps 'y' as name
y.register_hook(save_grad('y'))
z.register_hook(save_grad('z'))
z.backward()
print(grads['y'])
print(grads['z'])import os
import torch
import torch.nn as nn
import torch.utils.data as Data
import torchvision
import matplotlib.pyplot as plt
# torch.manual_seed(1) # reproducible
# Hyper Parameters
EPOCH = 1 # train the training data n times, to save time, we just train 1 epoch
BATCH_SIZE = 50
LR = 0.001 # learning rate
DOWNLOAD_MNIST = False
# Mnist digits dataset
if not(os.path.exists('./mnist/')) or not os.listdir('./mnist/'):
# not mnist dir or mnist is empyt dir
DOWNLOAD_MNIST = True
train_data = torchvision.datasets.MNIST(
root='./mnist/',
train=True, # this is training data
transform=torchvision.transforms.ToTensor(), # Converts a PIL.Image or numpy.ndarray to
# torch.FloatTensor of shape (C x H x W) and normalize in the range [0.0, 1.0]
download=DOWNLOAD_MNIST,
)
# plot one example
print(train_data.train_data.size()) # (60000, 28, 28)
print(train_data.train_labels.size()) # (60000)
plt.imshow(train_data.train_data[0].numpy(), cmap='gray')
plt.title('%i' % train_data.train_labels[0])
plt.show()
# Data Loader for easy mini-batch return in training, the image batch shape will be (50, 1, 28, 28)
train_loader = Data.DataLoader(dataset=train_data, batch_size=BATCH_SIZE, shuffle=True)
# pick 2000 samples to speed up testing
test_data = torchvision.datasets.MNIST(root='./mnist/', train=False)
test_x = torch.unsqueeze(test_data.test_data, dim=1).type(torch.FloatTensor)[:2000]/255. # shape from (2000, 28, 28) to (2000, 1, 28, 28), value in range(0,1)
test_y = test_data.test_labels[:2000]
class CNN(nn.Module):
def __init__(self):
super(CNN, self).__init__()
self.conv1 = nn.Sequential( # input shape (1, 28, 28)
nn.Conv2d(
in_channels=1, # input height
out_channels=16, # n_filters
kernel_size=5, # filter size
stride=1, # filter movement/step
padding=2, # if want same width and length of this image after Conv2d, padding=(kernel_size-1)/2 if stride=1
), # output shape (16, 28, 28)
nn.ReLU(), # activation
nn.MaxPool2d(kernel_size=2), # choose max value in 2x2 area, output shape (16, 14, 14)
)
self.conv2 = nn.Sequential( # input shape (16, 14, 14)
nn.Conv2d(16, 32, 5, 1, 2), # output shape (32, 14, 14)
nn.ReLU(), # activation
nn.MaxPool2d(2), # output shape (32, 7, 7)
)
self.out = nn.Linear(32 * 7 * 7, 10) # fully connected layer, output 10 classes
def forward(self, x):
x = self.conv1(x)
x = self.conv2(x)
x = x.view(x.size(0), -1) # flatten the output of conv2 to (batch_size, 32 * 7 * 7)
output = self.out(x)
return output, x # return x for visualization
cnn = CNN()
print(cnn) # net architecture
optimizer = torch.optim.Adam(cnn.parameters(), lr=LR) # optimize all cnn parameters
loss_func = nn.CrossEntropyLoss() # the target label is not one-hotted
# following function (plot_with_labels) is for visualization, can be ignored if not interested
from matplotlib import cm
try: from sklearn.manifold import TSNE; HAS_SK = True
except: HAS_SK = False; print('Please install sklearn for layer visualization')
def plot_with_labels(lowDWeights, labels):
plt.cla()
X, Y = lowDWeights[:, 0], lowDWeights[:, 1]
for x, y, s in zip(X, Y, labels):
c = cm.rainbow(int(255 * s / 9)); plt.text(x, y, s, backgroundcolor=c, fontsize=9)
plt.xlim(X.min(), X.max()); plt.ylim(Y.min(), Y.max()); plt.title('Visualize last layer'); plt.show(); plt.pause(0.01)
plt.ion()
# training and testing
for epoch in range(EPOCH):
for step, (b_x, b_y) in enumerate(train_loader): # gives batch data, normalize x when iterate train_loader
output = cnn(b_x)[0] # cnn output
loss = loss_func(output, b_y) # cross entropy loss
optimizer.zero_grad() # clear gradients for this training step
loss.backward() # backpropagation, compute gradients
optimizer.step() # apply gradients
if step % 50 == 0:
test_output, last_layer = cnn(test_x)
pred_y = torch.max(test_output, 1)[1].data.numpy()
accuracy = float((pred_y == test_y.data.numpy()).astype(int).sum()) / float(test_y.size(0))
print('Epoch: ', epoch, '| train loss: %.4f' % loss.data.numpy(), '| test accuracy: %.2f' % accuracy)
if HAS_SK:
# Visualization of trained flatten layer (T-SNE)
tsne = TSNE(perplexity=30, n_components=2, init='pca', n_iter=5000)
plot_only = 500
low_dim_embs = tsne.fit_transform(last_layer.data.numpy()[:plot_only, :])
labels = test_y.numpy()[:plot_only]
plot_with_labels(low_dim_embs, labels)
plt.ioff()
# print 10 predictions from test data
test_output, _ = cnn(test_x[:10])
pred_y = torch.max(test_output, 1)[1].data.numpy()
print(pred_y, 'prediction number')
print(test_y[:10].numpy(), 'real number')