Merge branch 'develop' into update/actions

.github/workflows/build.yml

@@ -0,0 +1,54 @@
+name: build
+
+on:
+  release:
+    types: [ released ]
+  pull_request:
+  workflow_dispatch:
+
+defaults:
+  run:
+    shell: micromamba-shell {0}
+
+jobs:
+  build:
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/publish_pure_python.yml@v1
+    with:
+      upload_to_pypi: false
+  freeze:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version:
+          - "3.11"
+      fail-fast: false
+    name: freeze versions (Python ${{ matrix.python-version }})
+    steps:
+      - uses: actions/checkout@v4
+      - uses: mamba-org/setup-micromamba@v1
+        with:
+          environment-name: jwql-${{ runner.os }}-py${{ matrix.python-version }}
+          environment-file: environment.yml
+          create-args: >-
+            python=${{ matrix.python-version }}
+            conda
+          init-shell: none
+          generate-run-shell: true
+      - run: pip install .
+      - run: pip list
+      - id: version
+        uses: mtkennerly/dunamai-action@v1
+      - id: filename
+        run: echo "filename=jwql_conda_py${{ matrix.python-version }}_${{ steps.version.outputs.version }}.yml" >> $GITHUB_OUTPUT
+      - run: conda env export --no-build | grep -v "name:" | grep -v "prefix:" > ${{ steps.filename.outputs.filename }}
+      - run: cat ${{ steps.filename.outputs.filename }}
+      - uses: actions/upload-artifact@v4
+        with:
+          name: ${{ steps.filename.outputs.filename }}
+          path: ${{ steps.filename.outputs.filename }}
+      - if: (github.event_name == 'release' && github.event.action == 'published')
+        uses: svenstaro/upload-release-action@v2
+        with:
+          file: ${{ steps.filename.outputs.filename }}
+
+

.github/workflows/ci.yml

@@ -1,54 +1,60 @@
-name: JWQL CI
+name: test
 
-on: [push, pull_request]
+on: 
+  push:
+  pull_request:
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
-defaults:
-  run:
-    shell: bash -l {0}
-
 jobs:
   check:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v4
         with:
-          python-version: "3.x"
+          python-version: "3.11"
       - run: pip install bandit
       - run: bandit ./jwql/ -c .bandit
 
   test:
     name: test (Python ${{ matrix.python-version }}, ${{ matrix.os }})
     runs-on: ${{ matrix.os }}
     strategy:
-      max-parallel: 5
-      fail-fast: false
       matrix:
-        os: [ubuntu-latest, macos-latest]
-        python-version: [3.9, "3.10"]
-
+        os: [ "ubuntu-latest", "macos-latest" ]
+        python-version: [ "3.11" ]
+      fail-fast: false
+    env:
+      PYTHONUNBUFFERED: 1
+    defaults:
+      run:
+        shell: micromamba-shell {0}
     steps:
       - uses: actions/checkout@v4
-
-      - uses: mamba-org/provision-with-micromamba@v15
+      
+      - uses: mamba-org/setup-micromamba@v1
         with:
-          environment-file: ./environment_python_${{ matrix.python-version }}.yml
-          cache-env: true
-          cache-downloads: true
+          environment-name: jwql-${{ runner.os }}-py${{ matrix.python-version }}
+          environment-file: environment.yml
+          create-args: >-
+            python=${{ matrix.python-version }}
+          init-shell: none
+          generate-run-shell: true
+
+      - run: pip install -e .[test] pytest-xdist
 
-      - run: pip install -e .[test]
+      - run: pip list
 
-      - run: conda env export
+      - run: micromamba env export
 
-      - uses: supercharge/[email protected]
+      - if: runner.os == 'Linux'
+        uses: supercharge/[email protected]
         with:
           redis-version: 5.0
-        if: runner.os == 'Linux'
 
       - run: python -c "import jwql; print('Version ' + jwql.__version__); print('Path ' + jwql.__path__[0])"
 
-      - run: pytest jwql/tests/
+      - run: pytest -n auto jwql/tests/

.readthedocs.yaml

@@ -12,10 +12,7 @@ version: 2
 build:
   os: ubuntu-22.04
   tools:
-    python: "3.9"
-  jobs:
-    post_install:
-      - pip install sqlalchemy==1.4.46
+    python: "3.11"
 
 # Build documentation in the docs/ directory with Sphinx
 sphinx:
@@ -27,6 +24,7 @@ sphinx:
 # Optionally declare the Python requirements required to build your docs
 python:
    install:
-      - requirements: rtd_requirements.txt
       - method: pip
         path: .
+        extra_requirements:
+           - docs

CHANGES.rst

@@ -1,5 +1,75 @@
 ## What's Changed
 
+1.2.8 (2024-04-18)
+==================
+
+Web Application
+~~~~~~~~~~~~~~~
+
+Project & API Documentation
+~~~~~~~~~~~~~~~~~~~~~~~~~~~
+- final model define for faking by @BradleySappington
+
+
+1.2.7 (2024-04-18)
+==================
+
+Web Application
+~~~~~~~~~~~~~~~
+
+Project & API Documentation
+~~~~~~~~~~~~~~~~~~~~~~~~~~~
+- Import monitor models by @bhilbert4
+
+
+1.2.6 (2024-04-15)
+==================
+
+Web Application
+~~~~~~~~~~~~~~~
+- Update NIRCam Background Monitor plots to handle new Claw Monitor columns by @bsunnquist
+
+Project & API Documentation
+~~~~~~~~~~~~~~~~~~~~~~~~~~~
+- add default to read_patt_num by @BradleySappington
+- migration work for next RC by @BradleySappington
+- Fix database empty fields by @BradleySappington
+
+
+1.2.5 (2024-03-19)
+==================
+
+Web Application
+~~~~~~~~~~~~~~~
+- Fix Bokeh `file_html` Call by @mfixstsci
+- Update Bad Pix Exclude Line by @mfixstsci
+- Interactive preview image - updates for Bokeh 3 by @bhilbert4
+
+Project & API Documentation
+~~~~~~~~~~~~~~~~~~~~~~~~~~~
+- Allow creation of pngs from 3D and 4D arrays by @bhilbert4
+- Add max length to charfield by @BradleySappington
+- Header fix by @BradleySappington
+
+
+1.2.4 (2024-03-11)
+==================
+
+Web Application
+~~~~~~~~~~~~~~~
+- Fix Broken Dashboard - ReImplement Anomaly Dash @BradleySappington
+- Add more info to image- and exposure-level pages @bhilbert4
+
+Project & API Documentation
+~~~~~~~~~~~~~~~~~~~~~~~~~~~
+- create pull_jwql_branch.sh by @BradleySappington
+- Claw monitor migrate by @york-stsci
+- Update readnoise monitor to use django database models by @york-stsci
+- Migration to django management by @york-stsci
+- Get subarray lists from datamodels schema by @bhilbert4
+- Retrieve program number and category efficiently by @bhilbert4
+
+
 1.2.3 (2024-01-26)
 ==================
 

README.md

@@ -44,7 +44,7 @@ Getting `jwql` up and running on your own computer requires four steps, detailed
 
 ### Prerequisites
 
-It is highly suggested that contributors have a working installation of `anaconda` or `miniconda` for Python 3.9+.  Downloads and installation instructions are  available here:
+It is highly suggested that contributors have a working installation of `anaconda` or `miniconda` for Python 3.10+.  Downloads and installation instructions are  available here:
 
 - [Miniconda](https://conda.io/miniconda.html)
 - [Anaconda](https://www.continuum.io/downloads)
@@ -86,13 +86,13 @@ source activate base/root
 Lastly, create the `jwql` environment via one of the `environment.yml` files (currently `environment_python_3.9.yml`, for python 3.9, and `environment_python_3.10.yml`, for python 3.10, are supported by `jwql`):
 
 ```
-conda env create -f environment_python_3.9.yml
+conda env create -f environment_python_3.10.yml
 ```
 
 or
 
 ```
-conda env create -f environment_python_3.10.yml
+conda env create -f environment_python_3.11.yml
 ```
 
 ### Configuration File

environment.yml

@@ -0,0 +1,3 @@
+dependencies:
+  - firefox
+  - python