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Draft bed2zarr code#281

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percyfal wants to merge 17 commits intosgkit-dev:mainsgkit-dev/bio2zarr:mainfrom percyfal:bed2zarrpercyfal/bio2zarr:bed2zarrCopy head branch name to clipboard

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Commits on Sep 17, 2024

• Draft bed2zarr code

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• Fix bed2zarr call

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• Rename zarr_field to bed_array

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Commits on Sep 18, 2024

• Refactor bed2zarr code base

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Commits on Sep 20, 2024

• Add initial support for BED3-BED12

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• Minor refactorization

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Commits on Oct 14, 2024

• Simplify main bed2zarr, encode features and contigs as ints

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Commits on Oct 15, 2024

• Add tests and withdraw support for BED9, BED12

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• Fix lint errors

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• Add pandas dependency

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• Update du stats

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Commits on Dec 6, 2024

• Fix cli docstring.

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Commits on Dec 9, 2024

• Add records chunk size and schema options to cli

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Commits on Dec 13, 2024

• Simplify bed2zarr conversion

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• Set smallest dtypes on DataSet

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• Linting

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• Remove xarray dependency

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