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Compute local alleles during encode #296

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Job	Run time
Packaging	24s
Test numpy versions (==1.26)	57s
Test (macos-13, 3.9)	4m 48s
Test numpy versions (>=2)	1m 0s
Lint	9s
Test (macos-14, 3.11)	4m 49s
Test Zarr versions (==2.18.3)	4m 26s
Test (ubuntu-latest, 3.9)	4m 46s
Test (ubuntu-latest, 3.10)	4m 46s
Test Zarr versions (>=3)	4m 43s
Test (ubuntu-latest, 3.11)	4m 29s
Test (ubuntu-latest, 3.12)	4m 45s
	40m 2s