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Compute local alleles during encode #294

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Job	Run time
Lint	8s
Packaging	25s
Test numpy versions (==1.26)	58s
Test (macos-13, 3.9)	13m 18s
Test numpy versions (>=2)	55s
Test Zarr versions (==2.18.3)	4m 29s
Test (macos-14, 3.11)	4m 57s
Test Zarr versions (>=3)	6m 18s
Test (ubuntu-latest, 3.9)	6m 45s
Test (ubuntu-latest, 3.10)	4m 39s
Test (ubuntu-latest, 3.11)	4m 30s
Test (ubuntu-latest, 3.12)	6m 28s
	53m 50s