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Compute local alleles during encode #291

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Run time

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Job	Run time
Lint	19s
Test (macos-13, 3.9)	16m 57s
Packaging	29s
Test numpy versions (==1.26)	57s
Test (macos-14, 3.11)	4m 16s
Test numpy versions (>=2)	1m 2s
Test (ubuntu-latest, 3.9)	6m 37s
Test Zarr versions (==2.18.3)	4m 24s
Test Zarr versions (>=3)	6m 14s
Test (ubuntu-latest, 3.10)	4m 43s
Test (ubuntu-latest, 3.11)	4m 47s
Test (ubuntu-latest, 3.12)	6m 10s
	56m 55s