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Fix flaky doublet test (#3436)
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flying-sheep authored Jan 13, 2025
1 parent 72b0b81 commit 66f1b61
Showing 1 changed file with 8 additions and 5 deletions.
13 changes: 8 additions & 5 deletions tests/external/test_hashsolo.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
from __future__ import annotations

import numpy as np
import pandas as pd
from anndata import AnnData

import scanpy.external as sce
Expand All @@ -27,9 +28,11 @@ def test_cell_demultiplexing():
sce.pp.hashsolo(test_data, test_data.obs.columns)

doublets = ["Doublet"] * 10
classes = list(
np.repeat(np.arange(10), 98).reshape(98, 10, order="F").ravel().astype(str)
)
classes = np.repeat(np.arange(10), 98).reshape(98, 10, order="F").ravel().tolist()
negatives = ["Negative"] * 10
classification = doublets + classes + negatives
assert test_data.obs["Classification"].astype(str).tolist() == classification
expected = pd.array(doublets + classes + negatives, dtype="string")
classification = test_data.obs["Classification"].array.astype("string")
# This is a bit flaky, so allow some mismatches:
if (expected != classification).sum() > 3:
# Compare lists for better error message
assert classification.tolist() == expected.tolist()

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