- rust pangenome linerarization and combination approach
- writes the 0 segment approach as asm for the minigraph alignment.
- please see the last commit message and if it says compiled binary then it is completed or else still in development version.
cargo build
╭─gauravsablok@fedora ~/Desktop/work/rust-pangenome-graph-combiner ‹main*›
╰─➤ ./target/debug/rust-pangenome-graph-combiner -h
Usage: rust-pangenome-graph-combiner <GRAPH>
Arguments:
<GRAPH> please provide the path to the graph file
Options:
-h, --help Print help
-V, --version Print version
- to run the binary
╭─gauravsablok@fedora ~/Desktop/rust/pangenome-graph-combiner ‹main*›
╰─➤ ./rust-pangenome-graph-combiner ./sample-file/sample-pangenome.gfa
L MTh0 0 + MTh4001 4001 + 0M SR:i:0 L1:i:4001 L2:i:501
L MTh4001 4001 + MTh4502 4502 + 0M SR:i:0 L1:i:501 L2:i:5003
L MTh4502 4502 + MTh9505 9505 + 0M SR:i:0 L1:i:5003 L2:i:3509
L MTh9505 9505 + MTh13014 13014 + 0M SR:i:0 L1:i:3509 L2:i:502
L MTh13014 13014 + MTh13516 13516 + 0M SR:i:0 L1:i:502 L2:i:3053
Results have been written:graph asm have been written
Gaurav Sablok