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365 Open 7,730 Closed
365 Open 7,730 Closed
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Issues list

How to convert visium seurat object to h5ad without missing image data?
#9617 opened Jan 13, 2025 by dajunlee
parallelization deleted? enhancement New feature or request
#9616 opened Jan 12, 2025 by dingyaozhang
scVI-based integration on GPU
#9613 opened Jan 9, 2025 by ravipatel4
SpatialDimplot() with "interactive=TRUE" doesn't work as expected bug Something isn't working
#9612 opened Jan 9, 2025 by Hyunsoo7268
Error in .subscript.2ary(x, i, j, drop = TRUE) : subscript out of bounds, after running SCTransform
#9611 opened Jan 8, 2025 by Dewe197
Taking long time to Integrate 110 scRNAseq libraries using Sketch and FindIntegrationAnchors functions.
#9610 opened Jan 8, 2025 by sentisci
how to merge multiple "SCT" assy in a combined Seurat V5 object
#9603 opened Jan 6, 2025 by Leonrunning
1
Sketch integration UMAP
#9598 opened Jan 5, 2025 by TdzBAS
TransferData result uneven and unnormalized data
#9596 opened Jan 4, 2025 by cmf1997
2
Merging before SCTransform and including nFeature_RNA and nCount_RNA in vars.to.regress.
#9595 opened Jan 3, 2025 by ChrisSteel-bio
Single cell data analysis
#9594 opened Jan 3, 2025 by DrSawal
13
Combining FOVs
#9591 opened Jan 2, 2025 by NatalieKAndersson
Can't get a dimplot overlapped by tissue image (Error in object[[img]]) bug Something isn't working
#9590 opened Jan 2, 2025 by rouninnomi
why the same number cell and celltype in seurat object lead to different averageExpression() result
#9584 opened Dec 29, 2024 by seekning
2
Deprecated facets Argument Warning in DotPlot Function bug Something isn't working
#9579 opened Dec 27, 2024 by ignagarlav
1
Follow-up on Bulk RNA-Seq Normalization Methods Using Seurat
#9578 opened Dec 26, 2024 by fmbetul
Error in methods :: slot(object = object, name = "layers") [[layers]][features, : incorrect number of dimensions, a problem Seurat V5
#9577 opened Dec 26, 2024 by Vincent8484
1
Does RunHarmony() output the same result with harmony intergration in Seurat with default parameter
#9575 opened Dec 26, 2024 by CampingOnSeabed
How to integrate two datasets with different numbers of ADT?
#9574 opened Dec 26, 2024 by SeanHW13
错误于validObject(object = x): 类别为“Assay”的对象无效: slots in class definition but not in object: "assay.orig" bug Something isn't working
#9573 opened Dec 25, 2024 by gulu-0601
After integrate two object, and then split then, there are something wrong with Cells() function bug Something isn't working
#9572 opened Dec 25, 2024 by tangmindan
[Batch Integration] ScaleData does not take layers into account when working with Seurat v5 data bug Something isn't working
#9568 opened Dec 21, 2024 by shwong-tw
Single cell data
#9561 opened Dec 19, 2024 by DrSawal
10
Unable to integrate separately SCTransformed scRNAseq Seurat Objects
#9557 opened Dec 17, 2024 by alexwskh
8
Seurat Objects Cannot Be Merged After Splitting bug Something isn't working
#9555 opened Dec 17, 2024 by Shinaipeng
2
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