finder_v1.0.0
finder is a gene annotator pipeline that automates the process of downloading short reads, aligning them, and using the assembled transcripts to generate gene annotations. Additionally, it uses protein sequences and reports gene predictions by BRAKER2. It is a fast, scalable, platform-independent software that generates gene annotations in GTF format. finder accepts inputs through command-line interface. It finds several novel genes/transcripts and also reports the tissue/conditions they were found to be in. For this version, no docker images could be provided due to distribution restrictions of the underlying software.
If you use finder for your research please cite
Sagnik Banerjee, Priyanka Bhandary, Margaret Woodhouse, Taner Z Sen, Roger P Wise, and Carson M Andorf. FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences BMC Bioinformatics
What's Changed
New Contributors
Full Changelog: https://github.com/sagnikbanerjee15/Finder/blob/finder_v1.0.0/Changelog.md
