revert requirements

requirements.txt

@@ -1,37 +1,144 @@
 anndata==0.10.9
+anndata2ri==1.3.2
+anyio==4.4.0
+argon2-cffi==23.1.0
+argon2-cffi-bindings==21.2.0
+cffi==1.17.1
 array_api_compat==1.8
+arrow==1.3.0
+asttokens==2.4.1
+async-lru==2.0.4
+attrs==24.2.0
+babel==2.16.0
+beautifulsoup4==4.12.3
+bleach==6.1.0
+certifi==2024.8.30
+cffi==1.17.0
+charset-normalizer==3.3.2
+click==8.1.7
+comm==0.2.2
 contourpy==1.3.0
 cycler==0.12.1
+debugpy==1.8.5
+decorator==5.1.1
+defusedxml==0.7.1
+executing==2.1.0
+fastjsonschema==2.20.0
 fonttools==4.53.1
+fqdn==1.5.1
+greenlet==3.0.3
+h11==0.14.0
 h5py==3.11.0
+httpcore==1.0.5
+httpx==0.27.2
+idna==3.8
+importlib_metadata==8.4.0
+ipykernel==6.29.5
+ipython==8.27.0
+ipywidgets==8.1.5
+isoduration==20.11.0
+jedi==0.19.1
+Jinja2==3.1.4
 joblib==1.4.2
-kiwisolver==1.4.7
+json5==0.9.25
+jsonpointer==3.0.0
+jsonschema==4.23.0
+jsonschema-specifications==2023.12.1
+jupyter==1.1.1
+jupyter-cache==1.0.0
+jupyter-console==6.6.3
+jupyter-events==0.10.0
+jupyter-lsp==2.2.5
+jupyter_client==8.6.2
+jupyter_core==5.7.2
+jupyter_server==2.14.2
+jupyter_server_terminals==0.5.3
+jupyterlab==4.2.5
+jupyterlab_pygments==0.3.0
+jupyterlab_server==2.27.3
+jupyterlab_widgets==3.0.13
+kiwisolver==1.4.5
 legacy-api-wrap==1.4
 llvmlite==0.43.0
+markdown-it-py==3.0.0
+MarkupSafe==2.1.5
 matplotlib==3.9.2
+matplotlib-inline==0.1.7
+mdurl==0.1.2
+mistune==3.0.2
+mudata==0.3.1
 natsort==8.4.0
+nbclient==0.10.0
+nbconvert==7.16.4
+nbformat==5.10.4
+nest-asyncio==1.6.0
 networkx==3.3
+notebook==7.2.2
+notebook_shim==0.2.4
 numba==0.60.0
 numpy==1.26.4
+overrides==7.7.0
 packaging==24.1
 pandas==2.2.2
+pandocfilters==1.5.1
+parso==0.8.4
 patsy==0.5.6
+pexpect==4.9.0
 pillow==10.4.0
+platformdirs==4.2.2
+prometheus_client==0.20.0
+prompt_toolkit==3.0.47
+psutil==6.0.0
+ptyprocess==0.7.0
+pure_eval==0.2.3
+pycparser==2.22
+Pygments==2.18.0
 pynndescent==0.5.13
 pyparsing==3.1.4
 python-dateutil==2.9.0.post0
+python-json-logger==2.0.7
 pytz==2024.1
+PyYAML==6.0.2
+pyzmq==26.2.0
+referencing==0.35.1
+requests==2.32.3
+rfc3339-validator==0.1.4
+rfc3986-validator==0.1.1
+rich==13.7.1
+rpds-py==0.20.0
+rpy2==3.5.16
 scanpy==1.10.2
 scikit-learn==1.5.1
 scipy==1.14.1
 seaborn==0.13.2
+Send2Trash==1.8.3
 session_info==1.0.0
-setuptools==74.1.1
+setuptools==74.1.0
 six==1.16.0
+sniffio==1.3.1
+soupsieve==2.6
+SQLAlchemy==2.0.32
+stack-data==0.6.3
 statsmodels==0.14.2
 stdlib-list==0.10.0
+tabulate==0.9.0
+terminado==0.18.1
 threadpoolctl==3.5.0
+tinycss2==1.3.0
+tornado==6.4.1
 tqdm==4.66.5
+traitlets==5.14.3
+types-python-dateutil==2.9.0.20240821
+typing_extensions==4.12.2
 tzdata==2024.1
+tzlocal==5.2
 umap-learn==0.5.6
+uri-template==1.3.0
+urllib3==2.2.2
+wcwidth==0.2.13
+webcolors==24.8.0
+webencodings==0.5.1
+websocket-client==1.8.0
 wheel==0.44.0
+widgetsnbextension==4.0.13
+zipp==3.20.1