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Notame normalization and feature selection #6
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vsuksi 2d391fd
Merge branch 'rformassspectrometry:main' into notame_normalization_an…
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Merge remote-tracking branch 'upstream/main' into notame_normalizatio…
vsuksi 26013fa
Address feedback and small additional changes
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Merge remote-tracking branch 'upstream/main' into notame_normalizatio…
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SummarizedExperiment-version
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Original file line number | Diff line number | Diff line change |
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@article{klavus_notame_2020, | ||
title={“Notame”: workflow for non-targeted LC--MS metabolic profiling}, | ||
author={Kl{\aa}vus, Anton and Kokla, Marietta and Noerman, Stefania and Koistinen, Ville M and Tuomainen, Marjo and Zarei, Iman and Meuronen, Topi and H{\"a}kkinen, Merja R and Rummukainen, Soile and Farizah Babu, Ambrin and others}, | ||
journal={Metabolites}, | ||
volume={10}, | ||
number={4}, | ||
pages={135}, | ||
year={2020}, | ||
publisher={MDPI} | ||
} | ||
|
||
@article{broadhurst_guidelines_2018, | ||
title={Guidelines and considerations for the use of system suitability and quality control samples in mass spectrometry assays applied in untargeted clinical metabolomic studies}, | ||
author={Broadhurst, David and Goodacre, Royston and Reinke, Stacey N and Kuligowski, Julia and Wilson, Ian D and Lewis, Matthew R and Dunn, Warwick B}, | ||
journal={Metabolomics}, | ||
volume={14}, | ||
pages={1--17}, | ||
year={2018}, | ||
publisher={Springer} | ||
} | ||
|
||
@article{kirwan_characterising_2013, | ||
title={Characterising and correcting batch variation in an automated direct infusion mass spectrometry (DIMS) metabolomics workflow}, | ||
author={Kirwan, JA and Broadhurst, DI and Davidson, RL and Viant, MR}, | ||
journal={Analytical and bioanalytical chemistry}, | ||
volume={405}, | ||
pages={5147--5157}, | ||
year={2013}, | ||
publisher={Springer} | ||
} | ||
|
||
@article{dieterle_probabilistic_2006, | ||
title={Probabilistic quotient normalization as robust method to account for dilution of complex biological mixtures. Application in 1H NMR metabonomics}, | ||
author={Dieterle, Frank and Ross, Alfred and Schlotterbeck, G{\"o}tz and Senn, Hans}, | ||
journal={Analytical chemistry}, | ||
volume={78}, | ||
number={13}, | ||
pages={4281--4290}, | ||
year={2006}, | ||
publisher={ACS Publications} | ||
} | ||
|
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This is perfect thanks a lot !