Repositories list

• qcreporter

  Public
  R

  •0•0•0•0•Updated Nov 20, 2023Nov 20, 2023

• Single-cell-RNA-seq-of-the-CRISPR-engineered-endogenous-tauopathy-model

  Public
  Scripts for Hassan 2022 scRNA-seq data analysis

  Jupyter Notebook

  •0•1•0•0•Updated Sep 22, 2023Sep 22, 2023

• scATAC_Seq_Pipeline

  Public
  R

  •0•0•0•0•Updated Aug 22, 2023Aug 22, 2023

• scATAC_Nextflow

  Public
  Shell

  •0•0•0•0•Updated Aug 17, 2023Aug 17, 2023

• nextflow-scRNAseq

  Public
  Nextflow for single-cell RNAseq

  R

  •0•0•0•0•Updated Jul 25, 2023Jul 25, 2023

• Hallacli2022Cell

  Public
  Bioinformatics code repository for Hallacli et al. Cell 2022

  R

  •0•0•0•0•Updated Jul 21, 2023Jul 21, 2023

• H5MANIPULATOR

  Public
  R

  •0•0•0•0•Updated May 23, 2023May 23, 2023

• nextflow_demo

  Public
  Demo of a Nextflow Pipeline for bulk-RNA Seq

  Nextflow

  •0•0•0•0•Updated May 18, 2023May 18, 2023

• AI2AMP-PD

  Public
  Python

  •0•0•0•0•Updated Mar 15, 2023Mar 15, 2023

• nextflow-RNAseq

  Public
  Nextflow pipeline for RNAseq analysis

  Nextflow

  •0•0•0•0•Updated Jan 3, 2023Jan 3, 2023

• HUB_vanitha2022_scRNA-seq

  Public
  R

  •0•0•0•0•Updated May 13, 2022May 13, 2022

• HUB_notes_scRNA-seq

  Public
  scRNA-seq note from Tingting Zhao

  0•0•0•0•Updated Dec 20, 2021Dec 20, 2021

• HUB_notes_scATAC-seq

  Public
  scATAC-seq notes from Tingting Zhao

  0•0•0•0•Updated Nov 9, 2021Nov 9, 2021

• bwh-bioinformatics-hub.github.io

  Public
  Training material for the BWH Genomics and Bioinformatics Hub

  HTML

  •0•0•0•0•Updated Jun 30, 2021Jun 30, 2021

• circRNA

  Public
  This repository contains all the essential codes for the circular RNA project

  Python

  •0•0•0•0•Updated Apr 19, 2021Apr 19, 2021

• Docker_images

  Public
  Dockerfile

  •0•0•0•0•Updated Oct 30, 2020Oct 30, 2020

• CircRNA-Mapping

  Public
  Common Workflow Language

  •1•1•0•0•Updated Oct 25, 2020Oct 25, 2020

• uk_biobank_qc_pipeline

  Public
  QC pipeline for uk-biobank imputation data

  Shell

  •

  MIT License

  •0•0•0•0•Updated Sep 22, 2020Sep 22, 2020

• Rshiny_PowerAnalysis

  Public
  Code for the powerEQTL R shiny application (https://xiaoqil.shinyapps.io/powerEQTL/)

  rshiny-appspowereqtl

  R

  •0•1•0•0•Updated Aug 18, 2020Aug 18, 2020

• STAT_powerAnalysis

  Public
  All about power analysis

  0•0•0•0•Updated Jun 5, 2020Jun 5, 2020

• NGS_workflow_RNAseq

  Public
  Pipeline for RNAseq data analysis

  0•0•0•0•Updated Jun 5, 2020Jun 5, 2020

• kent

  Public
  UCSC Genome Browser source tree. Stable branch: "beta".

  C

  •

  Other

  •91•0•0•0•Updated Jun 5, 2020Jun 5, 2020

• BRAINcode

  Public
  Script and pipeline for BRAINcode project

  HTML

  •5•0•0•0•Updated May 24, 2020May 24, 2020

• amp-pd-workflows

  Public
  Pipeline definitions used to construct AMP-PD data products

  WDL

  •

  BSD 3-Clause "New" or "Revised" License

  •6•0•0•0•Updated Nov 1, 2019Nov 1, 2019