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@Computational-Genomics-BSC Computational Genomics (BSC-CNS)

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    3 repositories

    • GenomeMosaicMaker

      Public
      Tool for copying read-alignments regions centered around variants (in VCF/VCF.GZ/BCF format) from existing genomes (in SAM/BAM/CRAM format) to insert them into canvas genomes (in SAM/BAM/CRAM format).
      genomicssamvcfbammosaiccram
      Python
      •
      Other
      •1•2•0•0•Updated Sep 12, 2024Sep 12, 2024

    • GenomeVariator

      Public
      Tool for adding genomic variants to an existing genome (in SAM/BAM/CRAM format). Currently supported variants are SNVs, indels and SVs (insertions, deletions, translocations, inversions and duplications). It generates realistic genomes as almost always less than 99% of the original real genome is modified.
      genomicssamvcfbamcramtumorized
      Python
      •
      Other
      •1•2•0•0•Updated Sep 12, 2024Sep 12, 2024

    • plink-bed-reader

      Public
      Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in pure Python.
      bioinformaticsgeneticsplinkbedvariantsnvgenotypeindel
      Python
      •
      MIT License
      •0•2•0•0•Updated Jul 3, 2024Jul 3, 2024