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    14 repositories

    • VCF2Dis

      Public
      VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format
      populationpopulation-geneticsboostrapdistance-matrixnj-tree
      C++
      •
      MIT License
      •20•83•1•0•Updated Jan 2, 2025Jan 2, 2025

    • RectChr

      Public
      Multi-level visualization of genomic statistical variables on rectangular chromosomes
      Perl
      •
      Other
      •10•85•0•0•Updated Nov 21, 2024Nov 21, 2024

    • PopLDdecay

      Public
      PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
      populationld-decaylinkage-disequilibriumdecay
      C++
      •
      MIT License
      •55•188•7•0•Updated Aug 15, 2024Aug 15, 2024

    • LDBlockShow

      Public
      LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
      gwasldld-blocklinkage-disequilibriald-heatmap
      Perl
      •
      MIT License
      •41•148•9•1•Updated Oct 5, 2023Oct 5, 2023

    • BamDeal

      Public
      BamDeal: a comprehensive toolkit for bam manipulation
      bam-coveragebam-statistics
      C++
      •
      MIT License
      •20•53•2•1•Updated Dec 21, 2022Dec 21, 2022

    • fqcheck

      Public
      fqcheck: A new simple and efficient software to stat base and quality distribution of fq file
      C++
      •3•1•0•0•Updated Feb 17, 2022Feb 17, 2022

    • FxTools

      Public
      FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation
      C++
      •
      MIT License
      •11•31•2•0•Updated Feb 16, 2022Feb 16, 2022

    • Reseqtools

      Public
      A Toolkit for analyzing next-generation DNA Re-Sequencing data
      GNU General Public License v2.0
      •29•81•3•0•Updated Feb 15, 2022Feb 15, 2022

    • gcaPDA

      Public
      gamete cell assisted chromosome-scale phased diploid assembler
      Perl
      •1•5•0•0•Updated Mar 26, 2021Mar 26, 2021

    • RRSelection

      Public
      RRSelection: A linkage disequilibrium method to detect selection region across population VCF
      C++
      •
      MIT License
      •2•14•0•0•Updated Feb 11, 2019Feb 11, 2019

    • soap2bam

      Public
      soap2bam: A efficient software tools to convert soap to bam format
      0•2•0•0•Updated Jun 13, 2018Jun 13, 2018

    • BamCoverage

      Public
      BamCoverage: A efficient software tools to calculate every site depth of genome based bam files
      3•6•0•0•Updated Jun 13, 2018Jun 13, 2018

    • BamSplit

      Public
      A efficient software tools to split Bam form all chromosome together to each chr one bam
      2•5•0•0•Updated Jun 13, 2018Jun 13, 2018

    • SoapNewCov

      Public
      SoapNewCov: A efficient software tools to Calculate site depth of genome based soap
      0•2•0•0•Updated Mar 15, 2018Mar 15, 2018