fix folder names

openproblems-bio · Jan 9, 2025 · ffbdcd3 · ffbdcd3
1 parent 44c8829
commit ffbdcd3
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Showing 12 changed files with 8 additions and 8 deletions.
diff --git a/src/methods/novel/run/config.vsh.yaml → src/methods/novel/novel/config.vsh.yaml b/src/methods/novel/run/config.vsh.yaml → src/methods/novel/novel/config.vsh.yaml
diff --git a/src/methods/novel/run/main.nf → src/methods/novel/novel/main.nf b/src/methods/novel/run/main.nf → src/methods/novel/novel/main.nf
diff --git a/src/methods/novel/predict/config.vsh.yaml → ...thods/novel/novel_predict/config.vsh.yaml b/src/methods/novel/predict/config.vsh.yaml → ...thods/novel/novel_predict/config.vsh.yaml
diff --git a/src/methods/novel/predict/script.py → src/methods/novel/novel_predict/script.py b/src/methods/novel/predict/script.py → src/methods/novel/novel_predict/script.py
diff --git a/src/methods/novel/train/config.vsh.yaml → ...methods/novel/novel_train/config.vsh.yaml b/src/methods/novel/train/config.vsh.yaml → ...methods/novel/novel_train/config.vsh.yaml
diff --git a/src/methods/novel/train/script.py → src/methods/novel/novel_train/script.py b/src/methods/novel/train/script.py → src/methods/novel/novel_train/script.py
diff --git a/src/methods/simple_mlp/run/config.vsh.yaml → ...ods/simple_mlp/simple_mlp/config.vsh.yaml b/src/methods/simple_mlp/run/config.vsh.yaml → ...ods/simple_mlp/simple_mlp/config.vsh.yaml
@@ -21,7 +21,7 @@ resources:
     type: nextflow_script
     entrypoint: run_wf
 dependencies:
-  - name: methods/simplemlp_train
-  - name: methods/simplemlp_predict
+  - name: methods/simple_mlp_train
+  - name: methods/simple_mlp_predict
 runners:
   - type: nextflow
diff --git a/src/methods/simple_mlp/run/main.nf → src/methods/simple_mlp/simple_mlp/main.nf b/src/methods/simple_mlp/run/main.nf → src/methods/simple_mlp/simple_mlp/main.nf
@@ -3,12 +3,12 @@ workflow run_wf {
   main:
   output_ch = input_ch
 
-    | simplemlp_train.run(
+    | simple_mlp_train.run(
       fromState: ["input_train_mod1", "input_train_mod2"],
       toState: ["input_model": "output"]
     )
 
-    | simplemlp_predict.run(
+    | simple_mlp_predict.run(
       fromState: ["input_train_mod2", "input_test_mod1", "input_model", "input_transform"],
       toState: ["output": "output"]
     )

diff --git a/...ethods/simple_mlp/predict/config.vsh.yaml → ...le_mlp/simple_mlp_predict/config.vsh.yaml b/...ethods/simple_mlp/predict/config.vsh.yaml → ...le_mlp/simple_mlp_predict/config.vsh.yaml
@@ -1,5 +1,5 @@
 __merge__: /src/api/comp_method_predict.yaml
-name: simplemlp_predict
+name: simple_mlp_predict
 
 info:
   test_setup:

diff --git a/src/methods/simple_mlp/predict/script.py → ...s/simple_mlp/simple_mlp_predict/script.py b/src/methods/simple_mlp/predict/script.py → ...s/simple_mlp/simple_mlp_predict/script.py
@@ -15,8 +15,8 @@
     'output': 'output/prediction'
 }
 meta = {
-    'config': 'target/executable/methods/simplemlp_predict/.config.vsh.yaml',
-    'resources_dir': 'target/executable/methods/simplemlp_predict',
+    'config': 'target/executable/methods/simple_mlp_predict/.config.vsh.yaml',
+    'resources_dir': 'target/executable/methods/simple_mlp_predict',
     'cpus': 10
 }
 ## VIASH END

diff --git a/src/methods/simple_mlp/train/config.vsh.yaml → ...mple_mlp/simple_mlp_train/config.vsh.yaml b/src/methods/simple_mlp/train/config.vsh.yaml → ...mple_mlp/simple_mlp_train/config.vsh.yaml
@@ -1,5 +1,5 @@
 __merge__: /src/api/comp_method_train.yaml
-name: simplemlp_train
+name: simple_mlp_train
 resources:
   - type: python_script
     path: script.py

diff --git a/src/methods/simple_mlp/train/script.py → ...ods/simple_mlp/simple_mlp_train/script.py b/src/methods/simple_mlp/train/script.py → ...ods/simple_mlp/simple_mlp_train/script.py