Merge pull request #3 from openproblems-bio/feature/no-ref/adjust-res…

…ources Adjust resources
openproblems-bio · Oct 2, 2024 · 791c6f6 · 791c6f6
2 parents f87631f + 5d10f14
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -21,6 +21,12 @@
 
 ## BUGFIXES -->
 
+# dimensionality_reduction 0.1.2 2024-09-23
+
+## MINOR CHANGES
+
+* Updated workflow resources for method and metric components (PR #3)
+
 # dimensionality_reduction 0.1.1 2024-09-18
 
 ## NEW FUNCTIONALITY

diff --git a/src/control_methods/random_features/config.vsh.yaml b/src/control_methods/random_features/config.vsh.yaml
@@ -24,4 +24,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [lowtime, lowmem, lowcpu]
diff --git a/src/control_methods/spectral_features/config.vsh.yaml b/src/control_methods/spectral_features/config.vsh.yaml
@@ -43,4 +43,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [hightime, midmem, highcpu]
diff --git a/src/control_methods/true_features/config.vsh.yaml b/src/control_methods/true_features/config.vsh.yaml
@@ -24,4 +24,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [lowtime, highmem, lowcpu]
diff --git a/src/methods/densmap/config.vsh.yaml b/src/methods/densmap/config.vsh.yaml
@@ -48,4 +48,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [hightime, midmem, lowcpu]
diff --git a/src/methods/diffusion_map/config.vsh.yaml b/src/methods/diffusion_map/config.vsh.yaml
@@ -35,4 +35,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [hightime, lowmem, lowcpu]
diff --git a/src/methods/ivis/config.vsh.yaml b/src/methods/ivis/config.vsh.yaml
@@ -50,4 +50,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [lowtime, midmem, midcpu]
diff --git a/src/methods/lmds/config.vsh.yaml b/src/methods/lmds/config.vsh.yaml
@@ -29,7 +29,7 @@ arguments:
     default: 1000
   - name: "--distance_method"
     type: string
-    description: Number of clusters to be estimated over the input dataset.
+    description: Distance measure to use.
     choices:
       [
         "euclidean",
@@ -62,4 +62,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, midcpu]
+      label: [lowtime, highmem, lowcpu]
diff --git a/src/methods/neuralee/config.vsh.yaml b/src/methods/neuralee/config.vsh.yaml
@@ -59,4 +59,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [midtime, midmem, midcpu]
diff --git a/src/methods/pca/config.vsh.yaml b/src/methods/pca/config.vsh.yaml
@@ -44,4 +44,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [lowtime, midmem, midcpu]
diff --git a/src/methods/phate/config.vsh.yaml b/src/methods/phate/config.vsh.yaml
@@ -63,4 +63,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [lowtime, midmem, midcpu]
diff --git a/src/methods/pymde/config.vsh.yaml b/src/methods/pymde/config.vsh.yaml
@@ -53,4 +53,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [midtime, midmem, midcpu]
diff --git a/src/methods/simlr/config.vsh.yaml b/src/methods/simlr/config.vsh.yaml
@@ -68,4 +68,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [hightime, highmem, lowcpu]
diff --git a/src/methods/tsne/config.vsh.yaml b/src/methods/tsne/config.vsh.yaml
@@ -64,4 +64,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [lowtime, midmem, midcpu]
diff --git a/src/methods/umap/config.vsh.yaml b/src/methods/umap/config.vsh.yaml
@@ -54,4 +54,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [midtime, midmem, midcpu]
diff --git a/src/metrics/clustering_performance/config.vsh.yaml b/src/metrics/clustering_performance/config.vsh.yaml
@@ -77,4 +77,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, midmem, midcpu]
+      label: [midtime, midmem, lowcpu]
diff --git a/src/metrics/coranking/config.vsh.yaml b/src/metrics/coranking/config.vsh.yaml
@@ -107,4 +107,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, highmem, highcpu]
+      label: [hightime, lowmem, lowcpu]
diff --git a/src/metrics/density_preservation/config.vsh.yaml b/src/metrics/density_preservation/config.vsh.yaml
@@ -44,4 +44,4 @@ runners:
   - type: executable
   - type: nextflow
     directives:
-      label: [midtime, lowmem, midcpu]
+      label: [midtime, midmem, midcpu]