Update emd per matching sample metric #16
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Describe your changes
Update EMD per sample metric so it doesn't need the sample flag and the layer flag.
The samples to calculate the metric is automatically inferred from the input_integrated and input_validation datasets.
Input_validation is needed because for some donors, the matching samples may not be given to the batch correction algorithm but is required to compute the metric.
Layer from each dataset is set to "integrated" and "preprocessed" automatically. This is ok as these layers are specified in respective files' yaml.
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I have performed a self-review of my code
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Proposed changes are described in the CHANGELOG.md
CI Tests succeed and look good!