Use batch_hvg in pcr metric

openproblems-bio · Jan 17, 2025 · de6f44c · de6f44c
1 parent 695f78f
commit de6f44c
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/metrics/pcr/script.py b/src/metrics/pcr/script.py
@@ -40,7 +40,7 @@
 
 print('compute score', flush=True)
 score = pcr_comparison(
-    adata_solution[:, adata_solution.var_names.isin(adata_integrated.var_names)],
+    adata_solution[:, adata_solution.var["batch_hvg"]],
     adata_integrated,
     embed='X_emb',
     covariate='batch',