update helper resources

openproblems-bio · Oct 18, 2024 · b7e473b · b7e473b
1 parent 82b8471
commit b7e473b
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Showing 8 changed files with 8 additions and 8 deletions.
diff --git a/src/datasets/workflows/multimodal/process_openproblems_neurips2021_bmmc/config.vsh.yaml b/src/datasets/workflows/multimodal/process_openproblems_neurips2021_bmmc/config.vsh.yaml
@@ -116,7 +116,7 @@ resources:
   - type: nextflow_script
     path: main.nf
     entrypoint: run_wf
-  - path: /src/wf_utils/helper.nf
+  - path: /common/nextflow_helpers/helper.nf
 dependencies:
   - name: datasets/loaders/multimodal/openproblems_neurips2021_bmmc
   - name: datasets/normalization/log_cp

diff --git a/src/datasets/workflows/multimodal/process_openproblems_neurips2022_pbmc/config.vsh.yaml b/src/datasets/workflows/multimodal/process_openproblems_neurips2022_pbmc/config.vsh.yaml
@@ -122,7 +122,7 @@ resources:
   - type: nextflow_script
     path: main.nf
     entrypoint: run_wf
-  - path: /src/wf_utils/helper.nf
+  - path: /common/nextflow_helpers/helper.nf
 dependencies:
   - name: datasets/loaders/multimodal/openproblems_neurips2022_pbmc
   - name: datasets/normalization/log_cp

diff --git a/src/datasets/workflows/multimodal/process_openproblems_v1_multimodal/config.vsh.yaml b/src/datasets/workflows/multimodal/process_openproblems_v1_multimodal/config.vsh.yaml
@@ -144,7 +144,7 @@ resources:
   - type: nextflow_script
     path: main.nf
     entrypoint: run_wf
-  - path: /src/wf_utils/helper.nf
+  - path: /common/nextflow_helpers/helper.nf
 dependencies:
   - name: datasets/loaders/multimodal/openproblems_v1_multimodal
   - name: datasets/normalization/log_cp

diff --git a/src/datasets/workflows/scrnaseq/process_cellxgene_census/config.vsh.yaml b/src/datasets/workflows/scrnaseq/process_cellxgene_census/config.vsh.yaml
@@ -189,7 +189,7 @@ resources:
   - type: nextflow_script
     path: main.nf
     entrypoint: run_wf
-  - path: /src/wf_utils/helper.nf
+  - path: /common/nextflow_helpers/helper.nf
 dependencies:
   - name: datasets/loaders/scrnaseq/cellxgene_census
   - name: datasets/normalization/log_cp

diff --git a/src/datasets/workflows/scrnaseq/process_openproblems_v1/config.vsh.yaml b/src/datasets/workflows/scrnaseq/process_openproblems_v1/config.vsh.yaml
@@ -147,7 +147,7 @@ resources:
   - type: nextflow_script
     path: main.nf
     entrypoint: run_wf
-  - path: /src/wf_utils/helper.nf
+  - path: /common/nextflow_helpers/helper.nf
 dependencies:
   - name: datasets/loaders/scrnaseq/openproblems_v1
   - name: datasets/normalization/log_cp

diff --git a/src/datasets/workflows/spatial/process_tenx_visium/config.vsh.yaml b/src/datasets/workflows/spatial/process_tenx_visium/config.vsh.yaml
@@ -130,7 +130,7 @@ resources:
   - type: nextflow_script
     path: main.nf
     entrypoint: run_wf
-  - path: /src/wf_utils/helper.nf
+  - path: /common/nextflow_helpers/helper.nf
 dependencies:
   - name: datasets/loaders/spatial/tenx_visium
   - name: datasets/normalization/log_cp

diff --git a/src/datasets/workflows/spatial/process_zenodo/config.vsh.yaml b/src/datasets/workflows/spatial/process_zenodo/config.vsh.yaml
@@ -126,7 +126,7 @@ resources:
   - type: nextflow_script
     path: main.nf
     entrypoint: run_wf
-  - path: /src/wf_utils/helper.nf
+  - path: /common/nextflow_helpers/helper.nf
 dependencies:
   - name: datasets/loaders/spatial/zenodo
   - name: datasets/normalization/log_cp

diff --git a/src/datasets/workflows/spatial/process_zenodo_slidetags/config.vsh.yaml b/src/datasets/workflows/spatial/process_zenodo_slidetags/config.vsh.yaml
@@ -126,7 +126,7 @@ resources:
   - type: nextflow_script
     path: main.nf
     entrypoint: run_wf
-  - path: /src/wf_utils/helper.nf
+  - path: /common/nextflow_helpers/helper.nf
 dependencies:
   - name: datasets/loaders/spatial/zenodo_slidetags
   - name: datasets/normalization/log_cp