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Co-authored-by: Sai Nirmayi Yasa <[email protected]>
openproblems-bio · Oct 25, 2024 · 1af28fb · 1af28fb
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Showing 5 changed files with 7 additions and 7 deletions.
diff --git a/src/datasets/workflows/extract_dataset_info/config.vsh.yaml b/src/datasets/workflows/extract_dataset_info/config.vsh.yaml
@@ -29,6 +29,6 @@ resources:
     path: main.nf
     entrypoint: run_wf
 dependencies:
-  - name: common/extract_metadata
+  - name: utils/extract_uns_metadata
 runners:
   - type: nextflow
diff --git a/src/datasets/workflows/extract_dataset_meta/config.vsh.yaml b/src/datasets/workflows/extract_dataset_meta/config.vsh.yaml
@@ -19,6 +19,6 @@ resources:
     path: main.nf
     entrypoint: run_wf
 dependencies:
-  - name: common/extract_metadata
+  - name: utils/extract_uns_metadata
 runners:
   - type: nextflow
diff --git a/src/datasets/workflows/multimodal/process_openproblems_neurips2021_bmmc/config.vsh.yaml b/src/datasets/workflows/multimodal/process_openproblems_neurips2021_bmmc/config.vsh.yaml
@@ -128,8 +128,8 @@ dependencies:
   - name: datasets/processors/subsample
   - name: datasets/processors/svd
   - name: datasets/processors/hvg
-  - name: common/extract_metadata
-  - name: common/decompress_gzip
+  - name: utils/extract_uns_metadata
+  - name: utils/decompress_gzip
   # test_resources:
   #   - type: nextflow_script
   #     path: main.nf

diff --git a/src/datasets/workflows/multimodal/process_openproblems_neurips2022_pbmc/config.vsh.yaml b/src/datasets/workflows/multimodal/process_openproblems_neurips2022_pbmc/config.vsh.yaml
@@ -134,8 +134,8 @@ dependencies:
   - name: datasets/processors/subsample
   - name: datasets/processors/svd
   - name: datasets/processors/hvg
-  - name: common/extract_metadata
-  - name: common/decompress_gzip
+  - name: utils/extract_uns_metadata
+  - name: utils/decompress_gzip
   # test_resources:
   #   - type: nextflow_script
   #     path: main.nf

diff --git a/src/datasets/workflows/multimodal/process_openproblems_v1_multimodal/config.vsh.yaml b/src/datasets/workflows/multimodal/process_openproblems_v1_multimodal/config.vsh.yaml
@@ -156,7 +156,7 @@ dependencies:
   - name: datasets/processors/subsample
   - name: datasets/processors/svd
   - name: datasets/processors/hvg
-  - name: common/extract_metadata
+  - name: utils/extract_uns_metadata
   # test_resources:
   #   - type: nextflow_script
   #     path: main.nf