Replaced obsoleted GO term

- to fix QC error
obophenotype · Jul 25, 2024 · 98cb691 · 98cb691
1 parent 671f239
commit 98cb691
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Showing 3 changed files with 15 additions and 16 deletions.
diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl
@@ -14187,7 +14187,6 @@ Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097212>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097213>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097214>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097215>))
-Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097224>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097225>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097226>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097227>))
@@ -14714,6 +14713,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/GO_0120190>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0120198>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0120199>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0120200>))
+Declaration(Class(<http://purl.obolibrary.org/obo/GO_0120212>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0120213>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0120214>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0120215>))
@@ -52629,7 +52629,7 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/RO_0004023> "caus
 SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0004023> <http://purl.obolibrary.org/obo/RO_0002410>)
 SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0004023> <http://purl.obolibrary.org/obo/RO_0040035>)
 
-# Object Property: <http://purl.obolibrary.org/obo/RO_0004024> (disease causes disruption of)
+# Object Property: <http://purl.obolibrary.org/obo/RO_0004024> (disease disrupts)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/RO_0004024> "A relationship between a disease and a process where the disease process disrupts the execution of the process.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/RO_0004024> "disease causes disruption of")
@@ -159230,13 +159230,6 @@ EquivalentClasses(<http://purl.obolibrary.org/obo/GO_0097215> ObjectIntersection
 SubClassOf(<http://purl.obolibrary.org/obo/GO_0097215> <http://purl.obolibrary.org/obo/GO_0097213>)
 SubClassOf(<http://purl.obolibrary.org/obo/GO_0097215> <http://purl.obolibrary.org/obo/GO_1905709>)
 
-# Class: <http://purl.obolibrary.org/obo/GO_0097224> (obsolete sperm connecting piece)
-
-AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0100001> <http://purl.obolibrary.org/obo/GO_0097224> "GO:0120212")
-AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/GO_0097224> "The reason for obsoletion is that this term is equivalent to GO:0120212 sperm head-tail coupling apparatus.")
-AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0097224> "obsolete sperm connecting piece")
-AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/GO_0097224> "true"^^xsd:boolean)
-
 # Class: <http://purl.obolibrary.org/obo/GO_0097225> (sperm midpiece)
 
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0097225> "sperm midpiece")
@@ -163100,6 +163093,12 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0120200> "rod
 EquivalentClasses(<http://purl.obolibrary.org/obo/GO_0120200> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0001750> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CL_0000604>)))
 SubClassOf(<http://purl.obolibrary.org/obo/GO_0120200> <http://purl.obolibrary.org/obo/GO_0001750>)
 
+# Class: <http://purl.obolibrary.org/obo/GO_0120212> (sperm head-tail coupling apparatus)
+
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0120212> "sperm head-tail coupling apparatus")
+SubClassOf(<http://purl.obolibrary.org/obo/GO_0120212> <http://purl.obolibrary.org/obo/GO_0110165>)
+SubClassOf(<http://purl.obolibrary.org/obo/GO_0120212> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CL_0000019>))
+
 # Class: <http://purl.obolibrary.org/obo/GO_0120213> (regulation of histidine biosynthetic process)
 
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0120213> "regulation of histidine biosynthetic process")

diff --git a/src/patterns/data/default/entity_attribute_part_of.tsv b/src/patterns/data/default/entity_attribute_part_of.tsv
@@ -1505,7 +1505,7 @@ OBA:0004857		UBERON:0003991	fourth ventricle median aperture	PATO:0000051	morpho
 OBA:0004858		UBERON:0003992	fourth ventricle lateral aperture	PATO:0000051	morphology
 OBA:0004859		UBERON:0003993	interventricular foramen of CNS	PATO:0000051	morphology
 OBA:0004861		UBERON:0003994	pelvic ligament	PATO:0000051	morphology
-OBA:0004864		GO:0097224	sperm connecting piece	PATO:0000051	morphology
+OBA:0004864		GO:0120212	sperm head-tail coupling apparatus	PATO:0000051	morphology
 OBA:0004865		GO:0097225	sperm midpiece	PATO:0000051	morphology
 OBA:0004866		GO:0097226	sperm mitochondrial sheath	PATO:0000051	morphology
 OBA:0004867		GO:0097227	sperm annulus	PATO:0000051	morphology

diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl
@@ -1497,7 +1497,6 @@ Declaration(Class(<http://purl.obolibrary.org/obo/GO_0090398>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097009>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097205>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097208>))
-Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097224>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097225>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097226>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097227>))
@@ -1523,6 +1522,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/GO_0097730>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0098542>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0098846>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_0099524>))
+Declaration(Class(<http://purl.obolibrary.org/obo/GO_0120212>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_1901052>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_1903509>))
 Declaration(Class(<http://purl.obolibrary.org/obo/GO_1903510>))
@@ -43867,12 +43867,12 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_0004863> "anterior chamber of eyeball size")
 EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_0004863> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000117> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001766>)))
 
-# Class: <http://purl.obolibrary.org/obo/OBA_0004864> (obsolete sperm connecting piece morphology)
+# Class: <http://purl.obolibrary.org/obo/OBA_0004864> (sperm head-tail coupling apparatus morphology)
 
-AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "obo:oba/patterns/entity_attribute_part_of") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_0004864> "The morphology of a obsolete sperm connecting piece.")
-AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "obo:oba/patterns/entity_attribute_part_of") <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_0004864> "morphology of obsolete sperm connecting piece")
-AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_0004864> "obsolete sperm connecting piece morphology")
-EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_0004864> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000051> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002314> <http://purl.obolibrary.org/obo/GO_0097224>)))
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "obo:oba/patterns/entity_attribute_part_of") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_0004864> "The morphology of a sperm head-tail coupling apparatus.")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "obo:oba/patterns/entity_attribute_part_of") <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_0004864> "morphology of sperm head-tail coupling apparatus")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_0004864> "sperm head-tail coupling apparatus morphology")
+EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_0004864> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000051> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002314> <http://purl.obolibrary.org/obo/GO_0120212>)))
 
 # Class: <http://purl.obolibrary.org/obo/OBA_0004865> (sperm midpiece morphology)