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Trim packages to make expanded directory smaller to fit under Heroku limit.. #7

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Trim packages to make expanded directory smaller to fit under Heroku limit.. #7

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4bcdfee
Explicitly prune dependencies to shrink tg
epugh Jan 16, 2025
94415b2
strip out a few more mb of space
epugh Jan 16, 2025
39cb926
remove more
epugh Jan 18, 2025
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15 changes: 15 additions & 0 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -13,10 +13,25 @@ ENV TARGET_DIR=${GITHUB_WORKSPACE:-/github/workspace}
# Build the Jupyter lite web app, the pyodide kernel option is passed for offline availability
# (see https://jupyterlite.readthedocs.io/en/latest/howto/configure/advanced/offline.html), the
# Kernel version is taken from https://github.com/jupyterlite/pyodide-kernel/blob/main/packages/pyodide-kernel/package.json
#
# We need to trim the size of our package down, so we are explicitly deleting some default wheels
# from the resulting output. Hacky!
CMD jupyter lite build \
--config /build/jupyter_lite_config.json \
--lite-dir /build \
--no-sourcemaps \
--output-dir notebooks \
--pyodide https://github.com/pyodide/pyodide/releases/download/0.23.2/pyodide-0.23.2.tar.bz2 \
&& rm notebooks/static/pyodide/astropy-5.2* \
&& rm notebooks/static/pyodide/biopython-1.81* \
&& rm notebooks/static/pyodide/bokeh-3.1* \
&& rm notebooks/static/pyodide/Fiona-1.8* \
&& rm notebooks/static/pyodide/gdal-3.5* \
&& rm notebooks/static/pyodide/gensim* \
&& rm notebooks/static/pyodide/mne* \
&& rm notebooks/static/pyodide/mypy-1.1* \
&& rm notebooks/static/pyodide/opencv_python-4.7* \
&& rm notebooks/static/pyodide/RobotRaconteur-0.15* \
&& rm notebooks/static/pyodide/sympy-1.11* \
&& rm notebooks/static/pyodide/yt-4.1* \
&& tar -czf ${TARGET_DIR}/jupyter-lite-build.tgz notebooks
18 changes: 10 additions & 8 deletions jupyterlite/requirements.txt
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@@ -1,4 +1,6 @@
# Contents below from https://github.com/jupyterlite/demo/blob/main/requirements.txt
# Stripped out as many resources as possible to slim it down to fit in Heroku limits
# when deployed as part of Quepid.

# Core modules (mandatory)
jupyterlite-core==0.1.0
Expand All @@ -8,18 +10,18 @@ jupyterlab~=3.5.1
jupyterlite-pyodide-kernel==0.0.8

# JavaScript kernel (optional)
jupyterlite-javascript-kernel==0.1.0b21
# jupyterlite-javascript-kernel==0.1.0b21

# Language support (optional)
jupyterlab-language-pack-fr-FR
jupyterlab-language-pack-zh-CN
# jupyterlab-language-pack-fr-FR
# jupyterlab-language-pack-zh-CN

# SQLite kernel (optional)
jupyterlite-xeus-sqlite==0.2.1
#jupyterlite-xeus-sqlite==0.2.1
# P5 kernel (optional)
jupyterlite-p5-kernel==0.1.0
#jupyterlite-p5-kernel==0.1.0
# Lua kernel (optional)
jupyterlite-xeus-lua==0.3.1
# jupyterlite-xeus-lua==0.3.1

# JupyterLab: Fasta file renderer (optional)
jupyterlab-fasta>=3,<4
Expand All @@ -41,7 +43,7 @@ ipympl>=0.8.2
# Python: ipycanvas library for Jupyter notebooks (optional)
ipycanvas>=0.9.1
# Python: ipyleaflet library for Jupyter notebooks (optional)
ipyleaflet
# ipyleaflet

# Python: plotting libraries (optional)
plotly>=5,<6
Expand All @@ -50,4 +52,4 @@ bqplot

# Contents below added from https://jupyterlite.readthedocs.io/en/latest/howto/configure/advanced/offline.html

jupyterlite-core[mathjax]==0.1.0
#jupyterlite-core[mathjax]==0.1.0
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