no dockerfile

.github/dependabot.yml

@@ -1,23 +1,9 @@
 version: 2
 updates:
-  - package-ecosystem: pip
-    directory: "/"
-    open-pull-requests-limit: 1
-    schedule:
-      interval: daily
-    labels:
-      - automerge
   - package-ecosystem: github-actions
     directory: "/"
     open-pull-requests-limit: 1
     schedule:
       interval: daily
     labels:
       - automerge
-  - package-ecosystem: docker
-    directory: "/"
-    open-pull-requests-limit: 1
-    schedule:
-      interval: daily
-    labels:
-      - automerge

.github/workflows/ci.yml

@@ -13,46 +13,55 @@ concurrency:
 
 env:
   NPROC: '2' # Number of Julia processes to run the notebooks
+  CACHE_NUM: '1'
+  JULIA_CPU_TARGET: 'generic;haswell,clone_all'
+  JULIA_NUM_THREADS: 'auto'
+  JULIA_CONDAPKG_BACKEND: 'Current'
+  JULIA_CI: 'true'
 
 jobs:
   CI:
     runs-on: ubuntu-latest
-    permissions:
-      packages: write
     steps:
     - name: Checkout repository
       uses: actions/checkout@v4
-    - name: Login to Docker Hub
-      uses: docker/login-action@v3
+    - name: Read Julia version
+      uses: SebRollen/[email protected]
+      id: read_toml
       with:
-        registry: ghcr.io
-        username: ${{ github.repository_owner	}}
-        password: ${{ github.token }}
-    - name: Get docker image hash
-      id: img
-      run: echo "hash=${{ hashFiles('requirements.txt', 'Project.toml', 'Manifest.toml', 'src/**', 'env.Dockerfile') }}" >> "$GITHUB_OUTPUT"
-    - name: Build Docker container
-      env:
-        IMG: ghcr.io/${{ github.repository }}:${{ steps.img.outputs.hash }}
+        file: 'Manifest.toml'
+        field: 'julia_version'
+    - name: Install Julia using jill.sh
       run: |
-        docker manifest inspect ${IMG} && exit 0
-        docker build -f env.Dockerfile -t ${IMG} .
-        docker push ${IMG}
-    - name: Run Literate notebooks
-      env:
-        IMG: ghcr.io/${{ github.repository }}:${{ steps.img.outputs.hash }}
-      run: >
-        docker run --rm
-        -w /tmp -v ${{ github.workspace }}:/tmp
-        -e JULIA_PROJECT=@.
-        ${IMG}
-        julia --color=yes -p ${{ env.NPROC }} literate.jl
+        wget -O /tmp/jill.sh https://raw.githubusercontent.com/abelsiqueira/jill/main/jill.sh
+        bash /tmp/jill.sh --version ${{ steps.read_toml.outputs.value }} -y
+        echo "$HOME/.local/bin" >> $GITHUB_PATH
+    - name: Cache Julia deps
+      uses: actions/cache@v3
+      with:
+        path: |
+          ~/.julia
+          !~/.julia/registries
+        key: ${{ runner.os }}-julia-${{ env.CACHE_NUM }}-${{ hashFiles('src/**','Project.toml', 'Manifest.toml')}}
+        restore-keys: |
+          ${{ runner.os }}-julia-${{ env.CACHE_NUM }}-
     - name: Setup micromamba
       uses: mamba-org/setup-micromamba@v1
       with:
-        environment-file: conda.yml
+        environment-file: environment.yml
         cache-environment: true
         post-cleanup: all
+    - name: Install Julia deps
+      shell: micromamba-shell {0}
+      run: |
+        julia --color=yes -e 'using Pkg; Pkg.add(["PrettyTables", "Literate"])'
+        julia --project=@. --color=yes -e 'using Pkg, Dates; Pkg.instantiate(); Pkg.gc(collect_delay=Day(1))'
+    - name: Run program
+      shell: micromamba-shell {0}
+      env:
+        JULIA_PROJECT: '@.'
+        GKSwstype: '100'
+      run: julia --color=yes -p ${{ env.NPROC }} literate.jl
     - name: Build website
       shell: micromamba-shell {0}
       run: jupyter-book build docs/

.github/workflows/update-manifest.yml

@@ -16,7 +16,6 @@ concurrency:
 
 env:
   APP_ID: '189113' # https://github.com/apps/wen-wei-s-pr-bot
-  IMG_NAME: 'app:test'
 
 jobs:
   update-manifest:
@@ -27,20 +26,12 @@ jobs:
     steps:
       - name: Checkout
         uses: actions/checkout@v4
-      - name: Build and load docker image
-        uses: docker/build-push-action@v5
-        with:
-          context: .
-          file: 'env.Dockerfile'
-          tags: ${{ env.IMG_NAME }}
-          load: true
-          target: base
+      - name: Setup Julia
+        uses: julia-actions/setup-julia@v1
       - name: Update Julia dependencies
-        run: >
-          docker run --rm -w /tmp -v ${{ github.workspace }}:/tmp
-          -e JULIA_PKG_PRECOMPILE_AUTO=0
-          ${{ env.IMG_NAME }}
-          julia --color=yes --project=@. -e 'import Pkg; Pkg.update()'
+        env:
+          JULIA_PKG_PRECOMPILE_AUTO: '0'
+        run: julia --color=yes --project=@. -e 'import Pkg; Pkg.update()'
       # Authenticate with a custom GitHub APP
       # https://github.com/peter-evans/create-pull-request/blob/main/docs/concepts-guidelines.md#authenticating-with-github-app-generated-tokens
       - name: Generate token for PR

conda.yml → environment.yml

@@ -1,6 +1,10 @@
 name: ci
 
 dependencies:
+  - python>=3.11
   # Jupyter Book
   - jupyter-book
   - docutils>=0.17.1,<0.18|>=0.20
+  # PythonPlot
+  # - matplotlib
+  # - libstdcxx-ng<13.0