Merge pull request #229 from jhlegarreta/TransitionCIToGHA

MAINT: Transition CI to GHA

.github/workflows/test.yml

@@ -0,0 +1,71 @@
+name: Tests
+
+on:
+  push:
+    branches:
+      - main
+      - maint/*
+  pull_request:
+    branches:
+      - main
+      - maint/*
+  # Allow job to be triggered manually from GitHub interface
+  workflow_dispatch:
+
+defaults:
+  run:
+    shell: bash
+
+# Force tox and pytest to use color
+env:
+  FORCE_COLOR: true
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+permissions:
+  contents: read
+
+jobs:
+  stable:
+    # Check each OS, all supported Python, minimum versions and latest releases
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: ['ubuntu-latest']
+        python-version: ['3.10', '3.11', '3.12']
+        dependencies: ['full', 'pre']
+        include:
+          - os: ubuntu-latest
+            python-version: '3.10'
+            dependencies: 'min'
+
+    env:
+      DEPENDS: ${{ matrix.dependencies }}
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          submodules: recursive
+          fetch-depth: 0
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+          allow-prereleases: true
+      - name: Display Python version
+        run: python -c "import sys; print(sys.version)"
+      - name: Install tox
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install tox tox-gh-actions
+      - name: Show tox config
+        run: tox c
+      - name: Run tox
+        run: tox -v --exit-and-dump-after 1200
+      - uses: codecov/codecov-action@v4
+        if: ${{ always() }}
+        with:
+          files: cov.xml
+          token: ${{ secrets.CODECOV_TOKEN }}

README.rst

@@ -14,8 +14,8 @@
    :target: https://pypi.python.org/pypi/eddymotion/
    :alt: Latest Version
 
-.. image:: https://circleci.com/gh/nipreps/eddymotion/tree/main.svg?style=shield
-   :target: https://circleci.com/gh/nipreps/eddymotion/tree/main
+.. image:: https://github.com/nipreps/eddymotion/actions/workflows/test.yml/badge.svg
+   :target: https://github.com/nipreps/eddymotion/actions/workflows/test.yml
    :alt: Testing
 
 .. image:: https://github.com/nipreps/eddymotion/actions/workflows/pages/pages-build-deployment/badge.svg

pyproject.toml

@@ -171,7 +171,7 @@ filterwarnings = ["ignore::DeprecationWarning"]
 
 [tool.coverage.run]
 branch = true
-concurrency = 'multiprocessing'
+concurrency = ['multiprocessing']
 omit = [
     '*/tests/*',
     '*/__init__.py',

test/test_main.py

@@ -66,4 +66,4 @@ def test_main(tmp_path, datadir):
         )
     # assert Path(output_dir).joinpath("dwi.h5").exists()  # Empty
 
-    # Also, call python -m eddymotion or eddymotion from CircleCI ??
+    # Also, call python -m eddymotion or eddymotion from GHA ??

tox.ini

@@ -0,0 +1,85 @@
+[tox]
+requires =
+  tox>=4
+envlist =
+  py3{10,11,12}-{full,pre}
+  py310-min
+skip_missing_interpreters = true
+
+# Configuration that allows us to split tests across GitHub runners effectively
+[gh-actions]
+python =
+  3.10: py310
+  3.11: py311
+  3.12: py312
+
+[gh-actions:env]
+DEPENDS =
+  min: min
+  full: full
+  pre: pre
+
+[testenv]
+description = Pytest with coverage
+labels = test
+pip_pre =
+  pre: true
+pass_env =
+  # getpass.getuser() sources for Windows:
+  LOGNAME
+  USER
+  LNAME
+  USERNAME
+  # Pass user color preferences through
+  PY_COLORS
+  FORCE_COLOR
+  NO_COLOR
+  CLICOLOR
+  CLICOLOR_FORCE
+extras = test
+deps =
+  min: nipype ==1.8.5
+  min: pybids ==0.15.6
+commands =
+  pytest --doctest-modules --cov eddymotion --cov-report xml \
+  --junitxml=test-results.xml -v src/eddymotion {posargs}
+
+[testenv:docs]
+description = Build documentation site
+labels = docs
+allowlist_externals = make
+extras = doc
+commands =
+  make -C doc html
+
+[testenv:spellcheck]
+description = Check spelling
+labels = check
+deps =
+  codespell[toml]
+skip_install = true
+commands =
+  codespell . {posargs}
+
+[testenv:build{,-strict}]
+labels =
+  check
+  pre-release
+deps =
+  build
+  twine
+skip_install = true
+set_env =
+  build-strict: PYTHONWARNINGS=error
+commands =
+  python -m build
+  python -m twine check dist/*
+
+[testenv:publish]
+depends = build
+labels = release
+deps =
+  twine
+skip_install = true
+commands =
+  python -m twine upload dist/*