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Added description of how to run poredb from Github #1

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Added description of how to run poredb from Github #1

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12 changes: 10 additions & 2 deletions README.md
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Expand Up @@ -4,13 +4,21 @@ Poredb is a way to manage very large Oxford Nanopore datasets on the basic princ

-- track the files, rather than moving them around

## Running straight from github

git clone https://github.com/nickloman/poredb.git
rmdir poredb/poretools
cd poredb
git clone https://github.com/arq5x/poretools
touch poretools/__init__.py

## Usage

### Create a DB

poredb create myexperiment.db
python poredb_main.py create myexperiment.db
find . -name "*.fast5" > filelist.txt
poredb import myexperiment.db filelist.txt
python poredb_main.py poredb import myexperiment.db filelist.txt

## Extract all basecalls in FASTQ format

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