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[BUG] assay add assignment of measurement type term source ref and accession number is mixed up #232

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cmohl2013 opened this issue Nov 24, 2023 · 7 comments
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Type: Bug Something is not working, and it is confirmed by maintainers to be a bug.

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@cmohl2013
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Describe the bug

When executing following command, --measurementtypetermsourceref sets the measurement type term accesion number and vice versa.

arc assay add --studyidentifier yourStudyName --assayidentifier my-new-assay --measurementtypetermsourceref mytypetermsourceref --measurementtypetermaccessionnumber mytypetermaccssionnumber

OS and framework information (please complete the following information):

  • OS: Linux Ubuntu

Additional context

arc --version
Start processing parameterless command. 

Start Arc Version 
v0.5.0 
Done processing command. 
@cmohl2013
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same with technology type term accession number and technology type term source ref.

@andreaschrader
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Same as #203.

@HLWeil
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HLWeil commented Nov 27, 2023

Which version of the ARCCommander are you using? You can check that out using arc --version

@cmohl2013
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You see this in the bug description: v0.5.0

@HLWeil
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HLWeil commented Nov 27, 2023

Whoops, sry about that 😅
This is fixed between v0.5.0 and v.1.0.0, of which only a prerelease is online at the moment.

@HLWeil
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HLWeil commented Nov 27, 2023

Oh and also thanks @andreaschrader for the link. I closed that issue but forgot to mention the change. I'll keep this issue up until the full 1.0.0 release.

@cmohl2013
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@HLWeil thank you for the clarification.

@omaus omaus added the Type: Bug Something is not working, and it is confirmed by maintainers to be a bug. label Jun 5, 2024
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4 participants