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124 Open 223 Closed
124 Open 223 Closed
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Issues list

modkit bedmethyl merge bug bug Something isn't working troubleshooting workflow and data preparation questions
#350 opened Jan 17, 2025 by paulinor42
1
find-motifs --contig failed to parse any bedmethyl records
#349 opened Jan 17, 2025 by Ge0rges
1
Quality of life suggestion for motif bed enhancement New feature or request
#348 opened Jan 16, 2025 by Ge0rges
1
When multiple types of modifications are present, is differential methylation scoring based on a single type or a combination? question Looking for clarification on inputs and/or outputs
#347 opened Jan 16, 2025 by Tang-pro
3
How to Filter Sites for High-Confidence Modifications?
#346 opened Jan 16, 2025 by evans-ZH
5
color coding in sample-props bug Something isn't working
#345 opened Jan 15, 2025 by GregorD96
1
assess the precision of the 4mC ratio question Looking for clarification on inputs and/or outputs
#344 opened Jan 15, 2025 by hannan666666
2
mod threshold calculations
#343 opened Jan 15, 2025 by jorisbalc
1
Error during merging bedmethyl files troubleshooting workflow and data preparation questions
#342 opened Jan 14, 2025 by ralanany
1
I have some questions regarding the bed methyl file, would you help? question Looking for clarification on inputs and/or outputs
#340 opened Jan 14, 2025 by ralanany
1
--ref <REFERENCE_FASTA> is to select the reference genome or transcriptome question Looking for clarification on inputs and/or outputs
#338 opened Jan 10, 2025 by Tang-pro
2
Feature request enhancement New feature or request
#337 opened Jan 9, 2025 by kamaloxfordpathology
2
Samtools code for modkit repair documentation Improvements or additions to documentation
#336 opened Jan 9, 2025 by sandraionescu
1
failed to get modbase info for record 6bcfdea5-e9eb-4fc9-a72e-81744a77df80, Skipped: AUX data not found question Looking for clarification on inputs and/or outputs
#335 opened Jan 8, 2025 by Tang-pro
5
FEATURE REQUEST: Extract/Calls reports number of CpG's covered in the sample
#332 opened Jan 6, 2025 by ethan-mcq
3
no m6A sites found in results question Looking for clarification on inputs and/or outputs troubleshooting workflow and data preparation questions
#331 opened Jan 4, 2025 by baibhav-bioinfo
1
Thank you, for the amazing tool, I have 9 bedmethyl files(4 control and 5 disease cases), these files generated from modkit tool. I have some questions question Looking for clarification on inputs and/or outputs
#328 opened Jan 2, 2025 by ralanany
1
Clarification on Modkit DMR Pair Results and Validate Accuracy question Looking for clarification on inputs and/or outputs
#327 opened Dec 31, 2024 by BrendanBeahan
4
Out of memory in modkit find-motifs troubleshooting workflow and data preparation questions
#323 opened Dec 27, 2024 by hannan666666
4
EOY release and thank you good first issue Good for newcomers
#320 opened Dec 21, 2024 by ArtRand
Failed to read fasta index (error 2) troubleshooting workflow and data preparation questions
#319 opened Dec 20, 2024 by ramnageena11
5
Compare methylation at a position between different genotype groups
#318 opened Dec 15, 2024 by sumudu-rangika
4
How to annotate bedmethyl file with cpg name instead of chr name and position and How can I find the pvalue for association of the cpg with the phenotype? question Looking for clarification on inputs and/or outputs
#317 opened Dec 15, 2024 by ralanany
4
modkit DMR result not as expected question Looking for clarification on inputs and/or outputs
#316 opened Dec 13, 2024 by baibhav-bioinfo
3
Error (0658) troubleshooting workflow and data preparation questions
#315 opened Dec 11, 2024 by ramnageena11
2
ProTip! no:milestone will show everything without a milestone.