Merge pull request #57 from monarch-initiative/ontology

Ontology
monarch-initiative · Jan 14, 2024 · c2273d4 · c2273d4
2 parents 2656536 + 96be5bc
commit c2273d4
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diff --git a/.github/workflows/documentation.yaml b/.github/workflows/documentation.yaml
@@ -2,7 +2,8 @@ name: mkdocs-generation
 on:
   push:
     branches:
-      - master
+      - develop
+      - ontology
       - main
 permissions:
   contents: write

diff --git a/docs/cda/cda_mutation_factory.md b/docs/cda/cda_mutation_factory.md
@@ -0,0 +1,3 @@
+# CdaMutationFactory
+
+::: src.oncoexporter.cda.CdaMutationFactory
diff --git a/docs/explanations/cda_mutation.md b/docs/explanations/cda_mutation.md
diff --git a/docs/index.md b/docs/index.md
@@ -7,7 +7,7 @@ Input data from sources such as Cancer Data Aggregator (CDA) are
 transformed into collections of
 [GA4GH Phenopackets](https://github.com/phenopackets/phenopacket-schema){:target="\_blank"}.
 
-
+The source code is available in the oncoexporter [GitHub repository](https://github.com/monarch-initiative/oncoexporter).
 
 ### Feedback
 

diff --git a/mkdocs.yml b/mkdocs.yml
@@ -31,11 +31,13 @@ nav:
       - cda_individual_factory: 'cda/cda_individual_factory.md'
       - cda_disease_factory: 'cda/cda_disease_factory.md'
       - cda_biosample_factory: 'cda/cda_biosample_factory.md'
+      - cda_mutation_factory: 'cda/cda_mutation_factory.md'
     - model:
       - "overview": "index.md"
       - "op_individual": "model/op_individual.md"
   - explanations:
     - cda_disease: 'explanations/cda_disease.md'
+    - cda_mutation: 'explanations/cda_mutation.md'
 
 
 plugins:
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,3 @@
		# CdaMutationFactory

		::: src.oncoexporter.cda.CdaMutationFactory