add scheduling to alliance disease ingest

.github/workflows/create-release.yaml

@@ -9,8 +9,8 @@ name: Create Release
 
 on:
   workflow_dispatch:
-  # schedule:
-  #   - cron: '0 0 * * 0'
+  schedule:
+    - cron: '0 0 3 * *' # Monthly on the 3rd day of the month
 
 jobs:
   create-release:
@@ -50,4 +50,3 @@ jobs:
           files: |
             output/*
           generate_release_notes: true
-          draft: true

src/alliance_disease_association_ingest/transform.py

@@ -1,10 +1,12 @@
 import uuid
 
 from biolink_model.datamodel.pydanticmodel_v2 import (
+    Association,
     GeneToDiseaseAssociation,
     GenotypeToDiseaseAssociation,
     VariantToDiseaseAssociation, KnowledgeLevelEnum, AgentTypeEnum,
 )
+from typing import Dict
 from koza.cli_utils import get_koza_app
 
 #  TODO: look at row["source"] to update this map
@@ -23,6 +25,7 @@
 
 koza_app = get_koza_app("alliance_disease")
 
+entities = []  # : Dict[str, Association] = {}
 while (row := koza_app.get_row()) is not None:
     subject_category = row["DBobjectType"]
     if subject_category == 'gene':
@@ -79,4 +82,6 @@
         agent_type=AgentTypeEnum.manual_agent
     )
 
-    koza_app.write(association)
+    entities.append(association)
+
+koza_app.write(*entities)