Bump Python (#168)

* migrate to pyproject.toml

* bump python

* remove inaccurate topics from pyproject.toml

* Revert "remove inaccurate topics from pyproject.toml"

This reverts commit 46a5e72.

* remove inaccurate topic metadata

.github/workflows/pytests.yml

@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ['3.8', '3.9', '3.10']
+        python-version: ['3.10', '3.11', '3.12']
 
     steps:
     - name: Checkout repo

README.md

@@ -51,7 +51,7 @@ Please cite this repository, along with the relevant preprint or paper, if you u
 (Optional but recommended) install [anaconda](https://www.anaconda.com/products/distribution) and create a virtual environment:
 
 ```sh
-conda create -y -n waveorder python=3.9
+conda create -y -n waveorder python=3.11
 conda activate waveorder
 ```
 

pyproject.toml

@@ -5,9 +5,66 @@ build-backend = "setuptools.build_meta"
 [tool.setuptools_scm]
 write_to = "waveorder/_version.py"
 
+[project]
+name = "waveorder"
+description = "Wave-optical simulations and deconvolution of optical properties"
+readme = "README.md"
+requires-python = ">=3.10"
+license = { file = "LICENSE" }
+authors = [{ name = "CZ Biohub SF", email = "[email protected]" }]
+maintainers = [
+  { name = "Talon Chandler", email = "[email protected]" },
+  { name = "Shalin Mehta", email = "[email protected]" },
+]
+keywords = [
+  "simulation",
+  'optics',
+  'phase',
+  'scattering',
+  'polarization',
+  'label-free',
+  'permittivity',
+  "reconstruction-algorithm",
+  'qlipp',
+  'mipolscope',
+  'permittivity-tensor-imaging',
+]
+classifiers = [
+  "Development Status :: 4 - Beta",
+  "Intended Audience :: Science/Research",
+  "License :: OSI Approved :: BSD License",
+  "Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
+  "Topic :: Scientific/Engineering",
+  "Topic :: Scientific/Engineering :: Image Processing",
+  "Topic :: Scientific/Engineering :: Bio-Informatics",
+  "Operating System :: POSIX :: Linux",
+  "Operating System :: Microsoft :: Windows",
+  "Operating System :: MacOS",
+]
+dependencies = [
+  "numpy>=1.21",
+  "matplotlib>=3.1.1",
+  "scipy>=1.3.0",
+  "pywavelets>=1.1.1",
+  "ipywidgets>=7.5.1",
+  "torch>=2.2.1",
+]
+dynamic = ["version"]
+
+[project.optional-dependencies]
+dev = ["pytest", "pytest-cov"]
+
+[project.urls]
+Homepage = "https://github.com/mehta-lab/waveorder"
+Repository = "https://github.com/mehta-lab/waveorder"
+Issues = "https://github.com/mehta-lab/waveorder/issues"
+
 [tool.black]
 line-length = 79
 
 [tool.isort]
 profile = "black"
-line_length = 79
+line_length = 79