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Add admonition about info-file w/r/t paired end mode #759

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Feb 1, 2024
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Add admonition about info-file w/r/t paired end mode #759

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Add admonition about info-file w/r/t paired end mode
odoublewen Feb 1, 2024
658d42f
Update reference.rst
marcelm Feb 1, 2024
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4 changes: 4 additions & 0 deletions doc/reference.rst
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Expand Up @@ -721,6 +721,10 @@ input read, but in the following cases, multiple rows may be output:
A row is written for *all* input reads, even those that are discarded
from the final FASTA/FASTQ output due to filtering options.

.. note:: Paired-end reads are not supported.
The info file currently does not contain any info about read 2 when
Cutadapt is run in paired-end mode.

Which fields are output in each row depends on whether an adapter match was
found in the read or not.

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