initial commit

.cruft.json

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+{
+  "template": "https://github.com/hrshdhgd/sphintoxetry-cookiecutter",
+  "commit": "2178e57e0567b44989336bfe032fd51f466e3164",
+  "checkout": null,
+  "context": {
+    "cookiecutter": {
+      "project_name": "linkml-renderer",
+      "__project_slug": "linkml_renderer",
+      "project_description": "Generating HTML and RDFa from LinkML data.",
+      "min_python_version": "3.7",
+      "file_name": "main",
+      "greeting_recipient": "World",
+      "full_name": "Harshad Hegde",
+      "email": "[email protected]",
+      "__author": "Harshad Hegde <[email protected]>",
+      "license": "Apache Software License 2.0",
+      "github_token_for_doc_deployment": "GH_TOKEN",
+      "github_token_for_pypi_deployment": "PYPI_TOKEN",
+      "_template": "https://github.com/hrshdhgd/sphintoxetry-cookiecutter"
+    }
+  },
+  "directory": null
+}

.github/workflows/deploy-docs.yml

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+name: Auto-deployment of Documentation
+on:
+  push:
+    branches: [ main ]
+jobs:
+  build-docs:
+    runs-on: ubuntu-latest
+    steps:
+    - name: Checkout
+      uses: actions/[email protected]
+      with:
+        fetch-depth: 0 # otherwise, you will failed to push refs to dest repo
+
+    - name: Set up Python 3.
+      uses: actions/setup-python@v3
+      with:
+        python-version: 3.9
+
+    - name: Install Poetry.
+      uses: snok/[email protected]
+
+    - name: Install dependencies.
+      run: |
+        poetry install -E docs
+        
+    - name: Build documentation.
+      run: |
+        echo ${{ secrets.GH_TOKEN }} >> src/linkml_renderer/token.txt
+        mkdir gh-pages
+        touch gh-pages/.nojekyll
+        cd docs/
+        poetry run sphinx-apidoc -o . ../src/linkml_renderer/ --ext-autodoc -f
+        poetry run sphinx-build -b html . _build
+        cp -r _build/* ../gh-pages/
+    
+    - name: Deploy documentation.
+      if: ${{ github.event_name == 'push' }}
+      uses: JamesIves/[email protected]
+      with:
+        branch: gh-pages
+        force: true
+        folder: gh-pages

.github/workflows/pypi-publish.yml

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+name: Publish Python Package
+
+on:
+  workflow_dispatch:
+  release:
+    types: [created]
+
+jobs:
+  build-n-publish:
+    name: Build and publish Python 🐍 distributions 📦 to PyPI
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/[email protected]
+
+      - name: Set up Python
+        uses: actions/[email protected]
+        with:
+          python-version: 3.9
+
+      - name: Install Poetry
+        run: pip install poetry poetry-dynamic-versioning
+
+      - name: Install dependencies
+        run: poetry install --no-interaction
+
+      - name: Build source and wheel archives
+        run: poetry build
+
+      - name: Publish distribution 📦 to PyPI
+        uses: pypa/[email protected]
+        with:
+          user: __token__
+          password: ${{ secrets.PYPI_TOKEN }}
+
+

.github/workflows/qc.yml

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+name: linkml-html QC
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [ "3.8", "3.9", "3.10" ]
+
+    steps:
+      - uses: actions/[email protected]
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v3
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install Poetry
+        uses: snok/[email protected]
+      - name: Install dependencies
+        run: poetry install --no-interaction
+
+      - name: Check code quality with flake8
+        run: poetry run tox -e flake8
+#       - name: Check package metadata with Pyroma
+#         run: poetry run tox -e pyroma
+      - name: Check static typing with MyPy
+        run: poetry run tox -e mypy
+
+      - name: Test with pytest and generate coverage file
+        run: poetry run tox -e py

.gitignore

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+docs/
+*.old
+tests/*/output/
+.idea
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/