fix HMMFk bug

lanl · Jul 24, 2024 · 979a22a · 979a22a
1 parent b93ca76
commit 979a22a
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Showing 86 changed files with 213 additions and 221 deletions.
diff --git a/TELF/factorization/HNMFk.py b/TELF/factorization/HNMFk.py
@@ -536,6 +536,8 @@ def _process_node(self, Ks, depth, original_indices, node_name, parent_node_name
             if len(cluster_c_indices) == 0:
                 continue
 
+            extracted_indicies = [current_node.original_indices[i] for i in cluster_c_indices]
+
             # save current results
             next_name = str(uuid.uuid1())
             current_node.child_node_names.append(next_name)
@@ -544,8 +546,8 @@ def _process_node(self, Ks, depth, original_indices, node_name, parent_node_name
             next_job = {
                 "parent_node_name":node_name,
                 "node_name":next_name,
-                "Ks":self._get_curr_Ks(node_k=current_node.k, num_samples=len(cluster_c_indices)),
-                "original_indices":cluster_c_indices.copy(),
+                "Ks":self._get_curr_Ks(node_k=current_node.k, num_samples=len(extracted_indicies)),
+                "original_indices":extracted_indicies.copy(),
                 "depth":current_node.depth+1,
                 "parent_topic":c,
             }

diff --git a/docs/Beaver.html b/docs/Beaver.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>TELF.pre_processing.Beaver: Fast matrix and tensor building tool &#8212; TELF 0.0.19 documentation</title>
+    <title>TELF.pre_processing.Beaver: Fast matrix and tensor building tool &#8212; TELF 0.0.20 documentation</title>
 
 
 
@@ -37,7 +37,7 @@
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
   <script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>
 
-    <script src="_static/documentation_options.js?v=f00aad14"></script>
+    <script src="_static/documentation_options.js?v=30839ccb"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?digest=5a5c038af52cf7bc1a1ec88eea08e6366ee68824"></script>
@@ -127,7 +127,7 @@
 
 
 
-    <p class="title logo__title">TELF 0.0.19 documentation</p>
+    <p class="title logo__title">TELF 0.0.20 documentation</p>
 
 </a></div>
         <div class="sidebar-primary-item"><nav class="bd-links" id="bd-docs-nav" aria-label="Main">

diff --git a/docs/Cheetah.html b/docs/Cheetah.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>TELF.applications.Cheetah: Advanced search by keywords and phrases &#8212; TELF 0.0.19 documentation</title>
+    <title>TELF.applications.Cheetah: Advanced search by keywords and phrases &#8212; TELF 0.0.20 documentation</title>
 
 
 
@@ -37,7 +37,7 @@
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
   <script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>
 
-    <script src="_static/documentation_options.js?v=f00aad14"></script>
+    <script src="_static/documentation_options.js?v=30839ccb"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?digest=5a5c038af52cf7bc1a1ec88eea08e6366ee68824"></script>
@@ -127,7 +127,7 @@
 
 
 
-    <p class="title logo__title">TELF 0.0.19 documentation</p>
+    <p class="title logo__title">TELF 0.0.20 documentation</p>
 
 </a></div>
         <div class="sidebar-primary-item"><nav class="bd-links" id="bd-docs-nav" aria-label="Main">

diff --git a/docs/HNMFk.html b/docs/HNMFk.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>TELF.factorization.HNMFk: Hierarchical Non-negative Matrix Factorization with Automatic Model Determination &#8212; TELF 0.0.19 documentation</title>
+    <title>TELF.factorization.HNMFk: Hierarchical Non-negative Matrix Factorization with Automatic Model Determination &#8212; TELF 0.0.20 documentation</title>
 
 
 
@@ -37,7 +37,7 @@
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
   <script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>
 
-    <script src="_static/documentation_options.js?v=f00aad14"></script>
+    <script src="_static/documentation_options.js?v=30839ccb"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?digest=5a5c038af52cf7bc1a1ec88eea08e6366ee68824"></script>
@@ -127,7 +127,7 @@
 
 
 
-    <p class="title logo__title">TELF 0.0.19 documentation</p>
+    <p class="title logo__title">TELF 0.0.20 documentation</p>
 
 </a></div>
         <div class="sidebar-primary-item"><nav class="bd-links" id="bd-docs-nav" aria-label="Main">

diff --git a/docs/NMFk.html b/docs/NMFk.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>TELF.factorization.NMFk: Non-negative Matrix Factorization with Automatic Model Determination &#8212; TELF 0.0.19 documentation</title>
+    <title>TELF.factorization.NMFk: Non-negative Matrix Factorization with Automatic Model Determination &#8212; TELF 0.0.20 documentation</title>
 
 
 
@@ -37,7 +37,7 @@
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
   <script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>
 
-    <script src="_static/documentation_options.js?v=f00aad14"></script>
+    <script src="_static/documentation_options.js?v=30839ccb"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?digest=5a5c038af52cf7bc1a1ec88eea08e6366ee68824"></script>
@@ -127,7 +127,7 @@
 
 
 
-    <p class="title logo__title">TELF 0.0.19 documentation</p>
+    <p class="title logo__title">TELF 0.0.20 documentation</p>
 
 </a></div>
         <div class="sidebar-primary-item"><nav class="bd-links" id="bd-docs-nav" aria-label="Main">

diff --git a/docs/RESCALk.html b/docs/RESCALk.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>TELF.factorization.RESCALk: RESCAL with Automatic Model Determination &#8212; TELF 0.0.19 documentation</title>
+    <title>TELF.factorization.RESCALk: RESCAL with Automatic Model Determination &#8212; TELF 0.0.20 documentation</title>
 
 
 
@@ -37,7 +37,7 @@
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
   <script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>
 
-    <script src="_static/documentation_options.js?v=f00aad14"></script>
+    <script src="_static/documentation_options.js?v=30839ccb"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?digest=5a5c038af52cf7bc1a1ec88eea08e6366ee68824"></script>
@@ -127,7 +127,7 @@
 
 
 
-    <p class="title logo__title">TELF 0.0.19 documentation</p>
+    <p class="title logo__title">TELF 0.0.20 documentation</p>
 
 </a></div>
         <div class="sidebar-primary-item"><nav class="bd-links" id="bd-docs-nav" aria-label="Main">

diff --git a/docs/SymNMFk.html b/docs/SymNMFk.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>TELF.factorization.SymNMFk: Symmetric Non-negative Matrix Factorization with Automatic Model Determination &#8212; TELF 0.0.19 documentation</title>
+    <title>TELF.factorization.SymNMFk: Symmetric Non-negative Matrix Factorization with Automatic Model Determination &#8212; TELF 0.0.20 documentation</title>
 
 
 
@@ -37,7 +37,7 @@
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
   <script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>
 
-    <script src="_static/documentation_options.js?v=f00aad14"></script>
+    <script src="_static/documentation_options.js?v=30839ccb"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?digest=5a5c038af52cf7bc1a1ec88eea08e6366ee68824"></script>
@@ -127,7 +127,7 @@
 
 
 
-    <p class="title logo__title">TELF 0.0.19 documentation</p>
+    <p class="title logo__title">TELF 0.0.20 documentation</p>
 
 </a></div>
         <div class="sidebar-primary-item"><nav class="bd-links" id="bd-docs-nav" aria-label="Main">

diff --git a/docs/TELF.factorization.decompositions.html b/docs/TELF.factorization.decompositions.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>TELF.factorization.decompositions package &#8212; TELF 0.0.19 documentation</title>
+    <title>TELF.factorization.decompositions package &#8212; TELF 0.0.20 documentation</title>
 
 
 
@@ -37,7 +37,7 @@
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
   <script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>
 
-    <script src="_static/documentation_options.js?v=f00aad14"></script>
+    <script src="_static/documentation_options.js?v=30839ccb"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?digest=5a5c038af52cf7bc1a1ec88eea08e6366ee68824"></script>
@@ -128,7 +128,7 @@
 
 
 
-    <p class="title logo__title">TELF 0.0.19 documentation</p>
+    <p class="title logo__title">TELF 0.0.20 documentation</p>
 
 </a></div>
         <div class="sidebar-primary-item"><nav class="bd-links" id="bd-docs-nav" aria-label="Main">

diff --git a/docs/TELF.factorization.decompositions.utilities.html b/docs/TELF.factorization.decompositions.utilities.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>TELF.factorization.decompositions.utilities package &#8212; TELF 0.0.19 documentation</title>
+    <title>TELF.factorization.decompositions.utilities package &#8212; TELF 0.0.20 documentation</title>
 
 
 
@@ -37,7 +37,7 @@
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
   <script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>
 
-    <script src="_static/documentation_options.js?v=f00aad14"></script>
+    <script src="_static/documentation_options.js?v=30839ccb"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?digest=5a5c038af52cf7bc1a1ec88eea08e6366ee68824"></script>
@@ -127,7 +127,7 @@
 
 
 
-    <p class="title logo__title">TELF 0.0.19 documentation</p>
+    <p class="title logo__title">TELF 0.0.20 documentation</p>
 
 </a></div>
         <div class="sidebar-primary-item"><nav class="bd-links" id="bd-docs-nav" aria-label="Main">

diff --git a/docs/TELF.factorization.html b/docs/TELF.factorization.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>TELF.factorization package &#8212; TELF 0.0.19 documentation</title>
+    <title>TELF.factorization package &#8212; TELF 0.0.20 documentation</title>
 
 
 
@@ -37,7 +37,7 @@
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
   <script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>
 
-    <script src="_static/documentation_options.js?v=f00aad14"></script>
+    <script src="_static/documentation_options.js?v=30839ccb"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?digest=5a5c038af52cf7bc1a1ec88eea08e6366ee68824"></script>
@@ -127,7 +127,7 @@
 
 
 
-    <p class="title logo__title">TELF 0.0.19 documentation</p>
+    <p class="title logo__title">TELF 0.0.20 documentation</p>
 
 </a></div>
         <div class="sidebar-primary-item"><nav class="bd-links" id="bd-docs-nav" aria-label="Main">

diff --git a/docs/TELF.factorization.utilities.html b/docs/TELF.factorization.utilities.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>TELF.factorization.utilities package &#8212; TELF 0.0.19 documentation</title>
+    <title>TELF.factorization.utilities package &#8212; TELF 0.0.20 documentation</title>
 
 
 
@@ -37,7 +37,7 @@
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
   <script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>
 
-    <script src="_static/documentation_options.js?v=f00aad14"></script>
+    <script src="_static/documentation_options.js?v=30839ccb"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?digest=5a5c038af52cf7bc1a1ec88eea08e6366ee68824"></script>
@@ -127,7 +127,7 @@
 
 
 
-    <p class="title logo__title">TELF 0.0.19 documentation</p>
+    <p class="title logo__title">TELF 0.0.20 documentation</p>
 
 </a></div>
         <div class="sidebar-primary-item"><nav class="bd-links" id="bd-docs-nav" aria-label="Main">

diff --git a/docs/TELF.html b/docs/TELF.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>TELF package &#8212; TELF 0.0.19 documentation</title>
+    <title>TELF package &#8212; TELF 0.0.20 documentation</title>
 
 
 
@@ -37,7 +37,7 @@
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
   <script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>
 
-    <script src="_static/documentation_options.js?v=f00aad14"></script>
+    <script src="_static/documentation_options.js?v=30839ccb"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?digest=5a5c038af52cf7bc1a1ec88eea08e6366ee68824"></script>
@@ -127,7 +127,7 @@
 
 
 
-    <p class="title logo__title">TELF 0.0.19 documentation</p>
+    <p class="title logo__title">TELF 0.0.20 documentation</p>
 
 </a></div>
         <div class="sidebar-primary-item"><nav class="bd-links" id="bd-docs-nav" aria-label="Main">

diff --git a/docs/TELF.pre_processing.Beaver.html b/docs/TELF.pre_processing.Beaver.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>TELF.pre_processing.Beaver package &#8212; TELF 0.0.19 documentation</title>
+    <title>TELF.pre_processing.Beaver package &#8212; TELF 0.0.20 documentation</title>
 
 
 
@@ -37,7 +37,7 @@
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
   <script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>
 
-    <script src="_static/documentation_options.js?v=f00aad14"></script>
+    <script src="_static/documentation_options.js?v=30839ccb"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/sphinx-book-theme.js?digest=5a5c038af52cf7bc1a1ec88eea08e6366ee68824"></script>
@@ -127,7 +127,7 @@
 
 
 
-    <p class="title logo__title">TELF 0.0.19 documentation</p>
+    <p class="title logo__title">TELF 0.0.20 documentation</p>
 
 </a></div>
         <div class="sidebar-primary-item"><nav class="bd-links" id="bd-docs-nav" aria-label="Main">