find AnVIL assets

01_Intro.Rmd

@@ -30,3 +30,4 @@ Note that some sections of this book cover steps in a lot of detail. When naviga
 ```{r, echo=FALSE, fig.alt="Double-clicking on the H2 headers (for example, 2.2) will expand the contents for view using the 'scroll_highlight' feature."}
 ottrpal::include_slide("https://docs.google.com/presentation/d/18yUr5XSEMgPk8JXFLKfG9JF7L9NpKbCF_mIcXagogKg/edit#slide=id.gde0d2ef5f6_0_1")
 ```
+

_output.yml

@@ -1,14 +1,14 @@
 bookdown::gitbook:
-  css: assets/style_anvil.css
+  css: assets/AnVIL_style/style.css
   includes:
-    before_body: assets/big-image_anvil.html
-    after_body: assets/footer.html
+    before_body: assets/AnVIL_style/big-image_anvil.html
+    after_body: assets/AnVIL_style/footer.html
   highlight: tango
   config:
     toc:
       collapse: section
       before: |
-       <a href="https://anvilproject.org/" target="_blank"><img src="assets/logo-anvil.png" style="width: 80%; padding-left: 15px; padding-top: 8px;"</a>
+       <a href="https://anvilproject.org/" target="_blank"><img src="assets/AnVIL_style/logo-anvil.png" style="width: 80%; padding-left: 15px; padding-top: 8px;"</a>
       after: |
        <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
        <p style="text-align:center;"> <a href="http://jhudatascience.org/"> The Johns Hopkins Data Science Lab </a></p>

assets/AnVIL_style/style.css

@@ -468,3 +468,4 @@ div.dictionary{
 div.reflection{
   background-image: url("../box_images/thinking_face.png");
 }
+

assets/style_anvil.css

@@ -58,11 +58,11 @@ h1, h2, h3, h4 {
 }
 
 
-.book .book-body .page-wrapper .page-inner section.normal h1, 
-.book .book-body .page-wrapper .page-inner section.normal h2, 
-.book .book-body .page-wrapper .page-inner section.normal h3, 
-.book .book-body .page-wrapper .page-inner section.normal h4, 
-.book .book-body .page-wrapper .page-inner section.normal h5, 
+.book .book-body .page-wrapper .page-inner section.normal h1,
+.book .book-body .page-wrapper .page-inner section.normal h2,
+.book .book-body .page-wrapper .page-inner section.normal h3,
+.book .book-body .page-wrapper .page-inner section.normal h4,
+.book .book-body .page-wrapper .page-inner section.normal h5,
 .book .book-body .page-wrapper .page-inner section.normal h6 {
     margin-top: 1em;
     margin-bottom: 1em;
@@ -80,7 +80,7 @@ h1, h2, h3, h4 {
   font-family: 'Lora';
   color: #0b8d96;
 }
-  
+
 
 /*----------DROP CAPS--------------*/
 
@@ -146,7 +146,7 @@ color: #012d72
 }
 
 /* all TOC list items, basically */
-.book .book-summary ul.summary li a, 
+.book .book-summary ul.summary li a,
 .book .book-summary ul.summary li span {
   padding-top: 8px;
   padding-bottom: 8px;
@@ -157,14 +157,14 @@ color: #012d72
 
 .summary a:hover {
   color: #68ace5 !important;
-} 
+}
 
 .book .book-summary ul.summary li.active>a { /*active TOC links*/
   color: #68ace5 !important;
   border-left: solid 4px;
   border-color: #68ace5;
   padding-left: 11px !important;
-} 
+}
 
 
 li.appendix span, li.part span { /* for TOC part names */
@@ -206,7 +206,7 @@ li.appendix span, li.part span { /* for TOC part names */
 }
 
 .summary > li:first-child {
-  height: auto !important; 
+  height: auto !important;
 }
 
 /* --------------Two columns--------------- */
@@ -332,12 +332,12 @@ div.note {
   margin-bottom: 0;
 }
 
-iframe { 
-   -moz-transform-origin: top left; 
-   -webkit-transform-origin: top left; 
-   -o-transform-origin: top left; 
-   -ms-transform-origin: top left; 
-   transform-origin: top left; 
+iframe {
+   -moz-transform-origin: top left;
+   -webkit-transform-origin: top left;
+   -o-transform-origin: top left;
+   -ms-transform-origin: top left;
+   transform-origin: top left;
 }
 
 .iframe-container {
@@ -404,14 +404,14 @@ a.anchor {
 }
 
 
-.hasAnchor:hover a.anchor, 
+.hasAnchor:hover a.anchor,
 a.anchor:hover {
   /*visibility: visible;*/
   opacity: 0.6;
 }
 
 /* disable anchors for headers with "no-anchor" class */
-.no-anchor .hasAnchor:hover a.anchor, 
+.no-anchor .hasAnchor:hover a.anchor,
 .no-anchor a.anchor:hover {
   opacity: 0 !important;
 }
@@ -439,4 +439,4 @@ a.anchor:hover {
   font-family: "Lora", serif;
   font-size: .85em;
   color: #193a5c;
-}
+}