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Simpler edge indexing#487

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jnsbck wants to merge 26 commits intov1_0_releasejaxleyverse/jaxley:v1_0_releasefrom simpler_edge_indexingjaxleyverse/jaxley:simpler_edge_indexingCopy head branch name to clipboard

+478-501

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Commits on Dec 23, 2024

• fix: v1 of new get_all_parameters and to_jax

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  dbb1b34

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• enh: simplified and refactored steping currents in synapses and channels.

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  d5a7d03

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• fix: cleanup

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  4107a46

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• fix: ran isort

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  050debc

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• wip: rename channel and synapse params and enh to_jax

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  3ffda84

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• wip: make get_all_params work with new indexing

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  f63b6ee

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• wip: more tests passing, small refactor

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  b9dd411

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• wip: more tests passing some fixes

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  2bf99a8

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• wip: new lookup table added

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  0eaea44

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• wip: more fixes

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• wip: save wip, bug hunting in _synapse_current voltages

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  150cf64

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• fix: fixed indexing

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  f1b0e1c

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• fix: fix remaining indexing issues, tests passing (I think)

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• wip: wip fixing multiple mechs with same param / state

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• wip: more refactoring in light of recent discussion about new channel api

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  f139f15

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• fix: fix jitting issues of to_jax!

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  44c4a80

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• fix: all tests finally passing

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  cd4f664

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• fix: ammend last commit

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  8bbc6ba

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• fix: small fixes and comments added

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  5e31be8

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• fix: move some things around

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• doc: add documentation

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• fix: fix param sharing

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• doc: update changelog

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Commits on Jan 11, 2025

• fix: refactor of shared states and got rid of prepare_for_jax and other unecessary things

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Commits on Jan 13, 2025

• fix: major refactor of jaxnodes and fix regression tests.

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  6f7f389

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• fix: ammend prev commit

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