Code

Better viewing#447

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jnsbck merged 72 commits intomainjaxleyverse/jaxley:mainfrom better_viewingjaxleyverse/jaxley:better_viewingCopy head branch name to clipboardOct 23, 2024

+1,508-1,729

Commits

Commits on Oct 15, 2024

• wip: context manager view working and set also. at also works recursively

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• wip: save wip adding required methods

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• wip: context manager view working and set also. at also works recursively

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• wip: adding in more attrs

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• wip: adding more attrs

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• wip: started on vis and added remaining args

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• wip: got sidetracked, added new plotting

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• wip: save wip

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• wip: save wip

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• wip: save wip

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• wip: save wip

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• wip: connect added

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• wip: add trainables and fix connecting

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• wip: add channel and synapse views

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• mv: move view notebook

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• chore: restructure notebook. in prep for PR

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• wip: save wip

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• wip: fixing bugs after rebase

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• wip: PR ready. fixed make_trainables

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• fix: ammend prev commit

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• wip: in process of transferring proof of concept to jaxley/modules

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• rm: rm old base from tracking

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• fix: small fixes

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• fix: save wip

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• wip: get methods from jaxley

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• fix: add latest changes from main

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• wip: transferring proof of concept after rebase

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• fix: add branch_inds_in_view back in

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• wip: all modules can be initialized

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• rm: remove old views

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• wip: new view now working for a lot of things

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Commits on Oct 16, 2024

• fix: all basic new view functions now work in module

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• fix: small fixes. xyzr working for view, trainables and reorder update_local_inds

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• fix: plot tests pass

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• rm: rm new_view notebook

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• fix: fix connect

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• add: add edge functionality. More tests passing now

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Commits on Oct 17, 2024

• enh/fix: better local indexing. better edge. small fixes to tests

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• fix: fixes for edge view

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• fix: make more tests pass

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• enh: small improvements to lazy indexing, iteration

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• fix: refactor edge viewing

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• fix: make set_ncomp work

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• fix: make set_ncomps work

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• fix: move_to tests pass

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• fix: more tests pass (groups)

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• fix: connect tests passing

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Commits on Oct 18, 2024

• fix: even more tests passing now

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• add: add distance method

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• fix: roll back fix for making synapses pass make_trainable since it causes issues elsewhere.

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• fix: kinda fix indexing tests by commenting out relevant sections and adding todos for new tests

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• fix: fixed issues when recording synapse states

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• fix: add fix mimicing old synapse viewing in get_all_parameters. all but 1 tests pass

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• fix: ALL TESTS PASSING!!! YAY modified group test to make pass, since new behaviour differs to prev

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Commits on Oct 20, 2024

• doc: add documentation to view and new methods of Module

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Commits on Oct 21, 2024

• doc: add more documentation

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• doc: add more documentation

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• fix: add not_implemented to copy

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• enh: add jaxnodes to View and ideas for new tests

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• fix: fix failing tests from prev commit

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• fix: ran black - ammend prev commit

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• fix: fix some of the things listed in https://github.com/jaxleyverse/jaxley/pull/447\#issuecomment-2427128474

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Commits on Oct 22, 2024

• fix: fix issues with jaxedges in View and trainables for synapses in view

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• fix: fix failing tests

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• fix: address comments

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• fix: allow autapses

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• fix: fix wrong kwarg in View

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• fix: fix type diffs between module and view. Add test for this

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• fix: fix printing trainables issue

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• fix: rename view args to fix failing tests

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• fix: fix type of cumsum_nseg and rename filter to select

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• fix: rm autapse failure case from test and add hotfix for cumsum_nbranches

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