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Using remotes before remotes is installed #67

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Using remotes before remotes is installed #67

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0388b16
Using remotes before remotes is installed
epijim Dec 29, 2023
cf8322a
Update dependencies.R
epijim Dec 29, 2023
6d7f3b0
Attempting to avoid rate limiting without giving an API key
epijim Dec 29, 2023
fbf4a9f
add devtools from CRAN
epijim Dec 30, 2023
b16ffe2
revert as wrong script
epijim Dec 30, 2023
a01c628
add devtools
epijim Dec 30, 2023
40cc697
Merge branch 'main' into remotes-missing
cicdguy May 14, 2024
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11 changes: 7 additions & 4 deletions dependencies.R
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Original file line number Diff line number Diff line change
@@ -1,14 +1,17 @@
#!/usr/bin/env Rscript

# Install remotes
install.packages("remotes")
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Turns out that pak is more efficient and will eventually replace remotes. What do you think about swapping out remotes with pak?


# Install latest ackages from Github
# Requires dev version of covr (>= 3.5.1.9003)
# Also install other package dependencies (for tests)
github_packages <- c(
"r-lib/covr",
"pharmaR/riskmetric",
"Genentech/covtracer"
"https://github.com/r-lib/covr.git",
"https://github.com/pharmaR/riskmetric.git",
"https://github.com/Genentech/covtracer.git"
)
lapply(github_packages, remotes::install_github)
lapply(github_packages, remotes::install_git) # avoid API rate limiting

# CRAN
options(repos = c("https://cloud.r-project.org/"))
Expand All @@ -18,7 +21,7 @@
if (!require("tinytex")) install.packages("tinytex", upgrade = "never", Ncpus = ncores)

# Conditionally install TinyTex
if(!dir.exists(paste(Sys.getenv("RUNNER_TEMP"), "TinyTeX", sep="/"))) {

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file=/github/workspace/dependencies.R,line=24,col=3,[spaces_left_parentheses_linter] Place a space before left parenthesis, except in a function call.

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file=/github/workspace/dependencies.R,line=24,col=63,[infix_spaces_linter] Put spaces around all infix operators.
# nolint start
tinytex_installer <- '
export TINYTEX_DIR=${RUNNER_TEMP}/TinyTeX
Expand All @@ -33,7 +36,7 @@
# nolint end
system(tinytex_installer)
tinytex::r_texmf()
permission_update <- '

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file=/github/workspace/dependencies.R,line=39,col=24,[single_quotes_linter] Only use double-quotes.
chown -R root:staff ${RUNNER_TEMP}/TinyTeX
chmod -R g+w ${RUNNER_TEMP}/TinyTeX
chmod -R g+wx ${RUNNER_TEMP}/TinyTeX/bin
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