citations, types of table and few corrections

topics/microbiome/tutorials/multivariable-association/data-library.yaml

@@ -5,8 +5,8 @@ destination:
   description: Galaxy Training Network Material
   synopsis: Galaxy Training Network Material. See https://training.galaxyproject.org
 items:
-- name: The new topic
-  description: Summary
+- - name: Microbiome
+  description: Microbiome research has grown substantially over the past decade in terms of the range of biomes sampled, identified taxa, and the volume of data derived from the samples
   items:
   - name: Determining multivariable association between various meta’omic features
       using MaAslin2l

topics/microbiome/tutorials/multivariable-association/tutorial.bib

@@ -19,7 +19,7 @@ @article{Batut2018
   url = {https://doi.org/10.1016/j.cels.2018.05.012},
   year = {2018},
   month = jun,
-  publisher = {Elsevier {BV}},
+  publisher = {Elsevier{BV}},
   volume = {6},
   number = {6},
   pages = {752--758.e1},
@@ -40,3 +40,86 @@ @online{gtn-website
   url = {https://training.galaxyproject.org},
   urldate = {2021-03-24}
 }
+
+@article{Himel2021,
+    title = {Multivariable association discovery in population-scale meta-omics studies},
+    author = {Himel Mallick and Ali Rahnavard and Lauren J. McIver and Siyuan Ma and Yancong Zhang and Long H. Nguyen and Timothy L. Tickle and 
+    	      George Weingart and Boyu Ren and Emma H. Schwager and Suvo Chatterjee and Kelsey N. Thompson and Jeremy E. Wilkinson and 
+    	      Ayshwarya Subramanian and Yiren Lu and Levi Waldron and Joseph N. Paulson and Eric A. Franzosa and Hector Corrada Bravo and 
+    	      Curtis Huttenhower},
+    year = {2021},
+    month = {11},
+    doi={https://doi.org/10.1371/journal.pcbi.1009442},
+    journal = {PLOS COMPUTATIONAL BIOLOGY},    
+    url={https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009442#sec002}
+}
+
+@article{Yang2023,
+    author = {Yang, Lu and Chen, Jun},
+    title = {Benchmarking differential abundance analysis methods for correlated microbiome sequencing data},
+    journal = {Briefings in Bioinformatics},
+    volume = {24},
+    number = {1},
+    pages = {bbac607},
+    year = {2023},
+    month = {01},
+    issn = {1477-4054},
+    doi = {10.1093/bib/bbac607},
+    url = {https://pubmed.ncbi.nlm.nih.gov/36617187/}   
+}
+
+
+@article{Yez2021,
+  title = {Integrating Dietary Data into Microbiome Studies: A Step Forward for Nutri-Metaomics},
+  volume = {13},
+  ISSN = {2072-6643},
+  url = {http://dx.doi.org/10.3390/nu13092978},
+  DOI = {10.3390/nu13092978},
+  number = {9},
+  journal = {Nutrients},
+  publisher = {MDPI AG},
+  author = {Yáñez,  Francisca and Soler,  Zaida and Oliero,  Manon and Xie,  Zixuan and Oyarzun,  Iñigo and Serrano-Gómez,  Gerard 
+  	   and Manichanh,  Chaysavanh},
+  year = {2021},
+  month = {08},
+  pages = {2978}
+}
+
+@article{Reasoner2024,
+  title = {Longitudinal profiling of the intestinal microbiome in children with cystic fibrosis treated with elexacaftor-tezacaftor-ivacaftor},
+  volume = {15},
+  ISSN = {2150-7511},
+  url = {http://dx.doi.org/10.1128/mbio.01935-23},
+  DOI = {10.1128/mbio.01935-23},
+  number = {2},
+  journal = {mBio},
+  publisher = {American Society for Microbiology},
+  author = {Reasoner,  Seth A. and Bernard,  Rachel and Waalkes,  Adam and Penewit,  Kelsi and Lewis,  Janessa and Sokolow,  Andrew G. and Brown, 
+  	    Rebekah F. and Edwards,  Kathryn M. and Salipante,  Stephen J. and Hadjifrangiskou,  Maria and Nicholson,  Maribeth R.},
+  editor = {Pier,  Gerald B. and O’Toole,  George},
+  year = {2024},
+  month = {02} 
+}
+
+@article{Lebeaux2021,
+  title = {The infant gut resistome is associated with E. coli and early-life exposures},
+  volume = {21},
+  ISSN = {1471-2180},
+  url = {http://dx.doi.org/10.1186/s12866-021-02129-x},
+  DOI = {10.1186/s12866-021-02129-x},
+  number = {1},
+  journal = {BMC Microbiology},
+  publisher = {Springer Science and Business Media LLC},
+  author = {Lebeaux,  Rebecca M. and Coker,  Modupe O. and Dade,  Erika F. and Palys,  Thomas J. and Morrison,  Hilary G. and Ross,  
+  	   Benjamin D. and Baker,  Emily R. and Karagas,  Margaret R. and Madan,  Juliette C. and Hoen,  Anne G.},
+  year = {2021},
+  month = {07}
+}
+
+@misc{IBDMDB,
+  author = {IBD MDB Consortium},
+  title = {The Inflammatory Bowel Disease Multi-omics Database},
+  url = {https://ibdmdb.org/}
+  urldate = {2021-03-24}
+}
+